ENST00000423942.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000423942.1 |
Source |
Gencode19 |
Same with |
lnc-LHX2-2:1,NONHSAT134662 |
Classification |
intronic(AS) |
Length |
788 nt |
Genomic location |
chr9+:126498716..126514220 |
Exon number |
2 |
Exons |
126498716..126498745,126513463..126514220 |
Genome context |
|
Sequence |
000001 TTAGCTTCCT CAGGAGAGCT GTTAGGGAAG CTTCTTTTTT GCTCCGTGGA AATGGAGCTT TTCTGTGTTT CGAGTGAAAA 000080
000081 TGAATGTAAC ACAGCTGAGA ATGGATGCAA TGGTCATTCC AGTCTTGAGA TCAGAAAGTG CTCCAGAAGG AAGAAGGTTG 000160 000161 TCACTGAACA CCACTCAGGT TTAGAATCAA GTCCATATGC CAACTAGCAT GGAAGAAGGG ATAATCACTA TCCTTGTTTT 000240 000241 TAAAAGAAAA CAAAAAAACC CCCTGCAGTT GAGGTTTGAA AAATCCAGTC TAAATCTGGG TGCTACCTCC AAAGTGACAC 000320 000321 GCAACATCCC TTCAAACAAT AACCAGAAAA ACCCAAGCAC ATTTCACATT CAAAAAATCA CTTTTGCCTT GGTCTAAAAA 000400 000401 CATCATCATC TCTAATGTCT ACCCGAAACC AGCTGACAGT ATTCCATTTG CTACCGGATA AATCTAAAAT CTTGAGCACG 000480 000481 CCCCAGAAGC ACTCACAATT GGACCCCAGA CTTCGATGGT ATCATCTCTT GCTATTGCTC CCTCACTGCA TTCTCAGCAT 000560 000561 CCTTTCATCT TGCTATACCT TTCATTTCTT GGGGACTTTG TGTATCAGTT CTCACTGCCT AGAGAGCTGT TCTCCCATTT 000640 000641 TCCTCCAGCC AAGCCCCCAC TCATTCTGCA AGACTCAGTT TAACTGGAAC TCATCAGCAA CACTTTCCCT TATTCTCAAG 000720 000721 TTAGAGATGG GCACTGTCTA ATCTGTGACT TTGAAGAACC TTACACATAA ATATGTTTTC TTAAAACA |
Predicted Small Protein
Name | ENST00000423942.1_smProtein_515:682 |
Length | 56 |
Molecular weight | 6213.2044 |
Aromaticity | 0.145454545455 |
Instability index | 55.5072727273 |
Isoelectric point | 6.21246337891 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0453590845749 |
Amino acid sequence | MVSSLAIAPSLHSQHPFILLYLSFLGDFVYQFSLPRELFSHFPPAKPPLILQDSV |
Secondary structure | LLLHHHHLLLLLLLLHHHHHHHHHHLLEEEEELLLHHHHHLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiii |