ENST00000426083.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000426083.1

Source

Gencode19

Same with

lnc-TMEM178-1:1

Classification

intergenic

Length

1438 nt

Genomic location

chr2+:39663778..39831216

Exon number

9

Exons

39663778..39663829,39680980..39681072,39681438..39681506,39743555..39743682,39745724..39745851,39785123..39785187,39814156..39814174,39815589..39815707,39830452..39831216

Genome context

Sequence
000001 AATGCGCGCA AGAAGGGAGG TGGCAAAAAT CATGTCCACC GGGGGGGCTC AGAGGCAGAG TCTTGCTTTG TTGTCCAGGC 000080
000081 TGGTCTTGAA CTTCTGAGCT CAAGTGATCC TCCCGCCTTG GCCTCCCAAA GTGCTGAGAC TACAGAGAGA GAATGCTAAC 000160
000161 GAGCTGTGAA ATGACCAAAG ATCTGGCAGC AGAAGGGAAA AGAAAAAATA ATGGGAAGAA GAGGATTTAT CTGACTCAAC 000240
000241 TGGAGATGGC TCCCTTCCCT TATTTATTGT TGCATCCTGA AGCTTCCCCC ATGCTGGGCT CAGTGTGAAC AAACAGCGCG 000320
000321 GGAGAATGCA ACCACTGCAG AGGCATATGT TTGAGATACC TGGCCACTGG AGGTCATCTC GTCTACTATA TTCACCGCAG 000400
000401 ATAAAGAATG AAAAGAGAAT ACACAACCTT GTGATTGCTA GCAGTGAAAG CTCAGAGTTA TGACATAACA GAATTGGCTC 000480
000481 ATGTGACTAT GGAGGCTGAG ATGTCCCAAG AGCTGGATAC CCAGGAGAAG CAAAGAGGGA GCTGATATCA TAAGGCACCC 000560
000561 TGTCTCAGCA CTCTCCCAAC TTTGTCCCCA GGCAGTGAGT GCTTCATGGC CAGAGAGAGA TAGGACTGAA CCCTCGTACC 000640
000641 TTCAAACATA TCTAAATCTC TGGTGCAGTT CAGGATATTA TCCATGAGCC TGTGTTTCAT GTAATTGTCA TGTTTCTTCG 000720
000721 GATTCCTTCA AACTGCTACA GCTTCTGTGT CTATCCCTGT CTTCCATGTG CTTGACAGCT TTGAAGAGTA CAGGTCCTTC 000800
000801 ATTCAGTAGA ATGACCACCA AGCCAGGTCC ACCAGATGTT TCATCATGGT TTTAGTGAGG TTATAAATTC TGGGCAGTAA 000880
000881 TTCTACAGAA GTGCTGCTTT GTTTTTCTCA GTGCCTCACA CCCAGTGGCA CATATCATCA CCACTGGTGA TGCTAACCTC 000960
000961 GATTGCTCAA CCACATTGTC TGCCAGCTCC CGCCTACTTA AATTCAACAT TTTGCCTTTT GCAATTTATT TGTGTTTTGT 001040
001041 GGGAACATAT TTTCATTTCT GAAATTAGTC AATATCCTGT TCCTTATCAA ACTTCCAACT CTGGTCTTAG CATCCATTGA 001120
001121 CTGAATCAAG TGCCTTTGTG TAAGTTTCCA CATGATGAGT GTCTATTTCC ATCATTGGTT CTATTTTTAT GAGCTGGTAT 001200
001201 TTTACTATAA GAAATAGCAT ATTATTTTCT ATGCTTAAAC CACTGCAAGT TTGACCCTTT CAAGCTGGTT TTTGTGTCCT 001280
001281 TTTGACATAT TCCCATTGTT CATTGAGCAT TTCCTTATTT TCTGGCATAA GAAGATGTTC CAAGTGCAAC TTGTATATTA 001360
001361 CCTGTTTCAG CCCTGGAATC AGACATTTTC CTAAGGATCC TTGGTTTCTT TGAATAAAGG ATACTATTTA GAAGCCAA
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Predicted Small Protein

Name ENST00000426083.1_smProtein_152:307
Length 52
Molecular weight 5723.7317
Aromaticity 0.0588235294118
Instability index 44.3901960784
Isoelectric point 8.93133544922
Runs 6
Runs residual 0.0365948359542
Runs probability 0.046119649061
Amino acid sequence MLTSCEMTKDLAAEGKRKNNGKKRIYLTQLEMAPFPYLLLHPEASPMLGSV
Secondary structure LLLLHHHHHHHHHHHHHHLLLLLEEEEEHHHLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -