ENST00000439707.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000439707.2 |
Source |
Gencode19 |
Same with |
NONHSAT033470 |
Classification |
intergenic |
Length |
2521 nt |
Genomic location |
chr13+:44482863..44604597 |
Exon number |
5 |
Exons |
44482863..44482912,44493521..44493569,44596611..44596804,44600959..44601030,44602442..44604597 |
Genome context |
|
Sequence |
000001 TCCATCAAGG TGTCACCAAT CTTCCAGTCT CCCAGGCAGA AGTTTTTGAG AGACAAATGG ATGGAAAAAC TTTTTGGCCC 000080
000081 TCTTCCTTAG GATCAGAAGG CAAAGATTGA CCAGACCAAG CCCTGAGACA CAGTGTTGAG AGCCAAGACA TAAAGTTGTG 000160 000161 AAGATTCAGA CCCAGAGCCC AGCAGGGCAC AGGCTGGAGG GGTGATGTGA GTGATCAGTA ACACCATGAA GACTCTGCTC 000240 000241 CTGGGTCAGG AATGCTTTTT TGTCCCTGTT TTTGGATTTT CCACCATGAT CAGCCAATGC AGAAAGAAAT CTAAAGGTGA 000320 000321 AGGAAAGGCA GCGTTCAGCA CTGAGCAAGT CCATGTTGGA GAAAGTTCAC AGGGAATTGG AAATCCTTGT CTTCGTGGTT 000400 000401 CCTGGCTCAG CAGGACCCCT GTGGGGCCTC TCCCTCTCTT GGGAAAGAGA TTGCTCTAGA AGGTTTACTA CACCAGTGAG 000480 000481 GAGAAGATGA GCGCAAGGGG GATTGGCCGG CTGAGGGCGA AATCAAGACT GGAGCCAAGT GCGCTGAGCT CTCACATGAG 000560 000561 GTCCTTTGCT CCTGTTCCCT GGAGGCATAA GTGGCTGGGG TAGAGAGAAG CAGGGGTATT TCTTCTGTCC TTTCTTGCTT 000640 000641 AGGGATTGGG GGTGGAAATC TCCCCGCATC TAAGGAAATT TGAAAAGACA AACTATGGCT GCTTCTTCAA GCAAACCACC 000720 000721 TCACCACACT ATCCAGGGGA TAAAACCCGC TTGCTGCTGC TAAATTATGC CAAGAGAGAA CATTCTGATA TTTCTCCTCA 000800 000801 ATTCTAGGCA TGACAGCGTG ACTTGGTGCT TAAAGGCATG GAGTTTTGAG TTGCAGACCT AGGTTTGAGT GCTGAATCTA 000880 000881 CTAGCTTCAG GGTGTTAAAA AAGTTTCTTA ATCTCTCTAA ACCTTATTTT TCTCAAAGAT AAAAAACTGG GTGTAGTTGT 000960 000961 GAGTATAGTG AATGCACATA GTATGTGCCT TTGGCATGTT AATTCACTAT TATTCTGGAC ATAATTTCTC CTAAGAAAAA 001040 001041 GGATGAACTA ATTGCAGGGC CTAGCCTAAG CTCTGAGAAG TCATTCGTTA TAGCATTTCA GTCCATAGTA AACAAGAAGA 001120 001121 AATGAGGTAA AGAGTTTAAA CCAGGGAAGG CATAGCTGTG GTCACCAAAC AACCTGTTAA AGGCGAGCTG TAGGCACCAA 001200 001201 AAAACCTATT ATGGACTGAA TTGTGTTCCT CAAATTCATA TGTTGAAGTG CTAACCCCAA GTACCAAATG TGACTGTATT 001280 001281 TGGGGATAGG GTCCCTGAAG AAGTCACTCA GCTGGAAGGA GTCATATTGG ATTAGGTGTT GGGAATTGGC TGGCCAAGGG 001360 001361 AGAAATCAAG GCTGGAACCA AGTGCTGAAC TCTCACATCA GGTCCTTTGC TCCTGTTCCC TGGACCCTAA TCCAATATGA 001440 001441 CTGGCATCTT TATATGAAGA GGAAGAGGCA CCAGAGGGTA CACACGCAGA GAAAAGGCCA TGTGTGGACA CAGTAAGATG 001520 001521 ACGGACATCT GTAAGCCAAG GAGGGAAACC TCAGAAGAAA CCAGCCTTGC CTGCACCTTG ATCTTGGAGG TCCAGTCTCC 001600 001601 AGAACTGTGA AAAAAATGAA CTGGTGTTGT TTAAATCCCC CAGTCGTGGT ATTTTGTCAT GGTGGCCCTA GAAGACAATA 001680 001681 TACAACCCAA AGGAATATTC TTTCCACTTT CTCCCTCTTC CACTTTATAG TTTTTTCTCC TTCGTTTCTT TCTTTTTCTC 001760 001761 TTTTACTTTC CTTTTCTTCT CTTCTCTTTC CTCTGGTTTT TAATTTTAAT TTTAATTTTT GGCCTTCCTA TACCTCCATT 001840 001841 TGCCTCTCCA GGAAGCTGAA TTCCAGACAA TTAATCATTC ATCTCATCAG TTCAGCAAAG CAAATGCCCT CAATGGTTTC 001920 001921 TTTTGTGATT CGATTATTAT GGGATCAGAA TGTATCTTAT TCCTCTGGGA AAAATGAAAC ATAAAAATTT CAGAAATAAG 002000 002001 GTTTTGGGCC AGCTTCATTG GTTTTAAGAG AAGGAAGGGA GGAGACTCAT GCAGGTTTGA CGCTGAGCAG CACCATGTGG 002080 002081 TTGGGCCTGG CAGGCACTCG AGGCTTTAGG TCTTGGTTTG AATCCAGACT AGAAAATCAT TACTTATTAA AAGCCTTGAG 002160 002161 GATATGGGTC TAGGAAAGTC TATGTGAAGA GATAATAGTT TGGAAAAAGT TTTGCAGAAC TAAAGAAAAG TTTCCACAGT 002240 002241 TACCTTTTCT GTCCTAATGT AGAGCATCTT TGTTAACTAG GTCTTGGATC AATCCAAGCT GTGTCTGAGA ATAACCATTT 002320 002321 ATAATTTCTC ACTGGCCAGC ACTAACACCC TTTAGAAAAG GAACTCAAAG CAGCCCTAGC AGCCAGAGTC ATGCGATCAT 002400 002401 GGTGGGAGTA CAGCTCCTCA CCAAGGTCAG CTCCTCAGTG AAATCCATGC CTTCTGGAGG ACTGCTTGTA AATAAATATT 002480 002481 AAGCACAACC ATTAAAAAAT AATTTGGCTG TGACCATCAA A |
Predicted Small Protein
Name | ENST00000439707.2_smProtein_1499:1609 |
Length | 37 |
Molecular weight | 4037.6389 |
Aromaticity | 0.0 |
Instability index | 99.9555555556 |
Isoelectric point | 5.05377197266 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.032709179768 |
Amino acid sequence | MCGHSKMTDICKPRRETSEETSLACTLILEVQSPEL |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHLHHHEEEEEEELLLL |
PRMN | - |
PiMo | - |