ENST00000442669.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000442669.2 |
Source |
Gencode19 |
Same with |
lnc-AC005493.1-1:4,NONHSAT120054 |
Classification |
intergenic |
Length |
1557 nt |
Genomic location |
chr7-:34758474..34873941 |
Exon number |
6 |
Exons |
34758474..34759420,34760253..34760397,34762896..34763007,34768349..34768428,34800724..34800803,34873749..34873941 |
Genome context |
|
Sequence |
000001 GACACAGAGA AGACCACTCC CACCTCCCCG AGTGCAAGGT GTGAAGGGAC AGATCTTTTA ACCATGCCTG CCCCCTTATA 000080
000081 CTTGCTGTTC ATAGAATTGC AACTGAAAGT GACCATGAGG ATCCACTGGA TGGAGTTACT TCTTTCTTAA GTGAGGAGGC 000160 000161 TAAGACCTGG TAAAGTTATG CAGTTTCCTC AAGGAGTGAC TTCTCCCCAG ATTTTTGTAT ACCTGACTCT GTTTCAGCAT 000240 000241 CCGCTTCCCA AAGAATGCAG TGTGAAGCAG GAGCTTATGT GAGAAGAAAC GCAGGGAGAC AGTTCAGTCA CTGCAATCTT 000320 000321 CATGCCCATC AGTTTCTTGT GAGAAGAAAA CAAGAGCTCC AATCTGTTAG ATGGTATTTT GAAGCAGGTC TTTGGGTAAA 000400 000401 GGACACCTAG ACCCAGTGAA GGTCATGGTG ATTATTATTG GACAATGGGA CATCACTCTG CTATTTGAAC AAATAAGACT 000480 000481 TTTTCCTGAC ATGCATCTGG AGGCAGGTCA AAGCTCCAGG CCAACTCCAA GTTTCTGATG GGGTCTCTAG CCAATGGAAG 000560 000561 GCTTCTTCTC CTTCAATTGC CTGACTCTTC AGGACTCTTA AATACTGCAG AAGTGAGAAA ATGAGACAGG TTGCACTGAG 000640 000641 GGCTGTTAGC CAGACAGAGT CTCGAACTGG AAGTCCATCT AGATGTTTTG CATAAGAGAA TGGAAACAAT CTGTCTGTGA 000720 000721 TTTAGGGACA TACTCTGGCA GCAATATGGG AATACAGTTT CAATCCTCAT TAACAAAACA GGTATGAAAT ACATATTTAT 000800 000801 TTAGTAAGGT GCCAGCTGTA TGAAAAATCC ATTTCTTATT TCCCATAATG TTTCTGAAAT GTCTTAGCAG TGCATAGAGA 000880 000881 CAGCATGTCA TCATTTTCTA GGGACTGTGT GTTATTGCAT TTTTCCTAGG GAAGATCTTT TCTAGGTCAC CTGCTCCTTC 000960 000961 ACTAAAGCTC TGACCAATCT AGCTTGCTAA CCTGTGACTC CATTTTCCTA AGTCCTGAGA GAGAAAAACG CTTTGCAGCA 001040 001041 AATTATGCCA GGCATCCTTG TGTCTAAATG AAAAAAGGAA AAAGCCTCCT TCCTTCCCTC TGTTGAGAAG TGCACGGTCC 001120 001121 ACATATGCAT GCACAGCATA TACTGTGAGG GTATTTGCAG TCCCTTGGGT TGCTTTGATA ACTGGCCAGG TTGCTGTTCT 001200 001201 ATTTTTCCAC ATTCTATTAA TCCTCCTACA GGCAGTTATT AGGTATTGAG TGCTCACACA CCCCTGGCAT AGTCACCACA 001280 001281 TGCCATTAGC TCCAGATAAA CTTCCAGAAA AAAGTCCATC CCCCACTTCT CTCAGCTGCC TGCCAACGCT GGACACCTTC 001360 001361 TCACCAAGCC AGCAGGACAG AGAAAAGCCT GGGCTTTAAG ATCAAACAAA CACAGCTTCA AATTAGGACT CTGTCACTTC 001440 001441 CTGTGTACTG GGCACTTTGC TGAGTATGTG GTTTCTCATC TGTAAAACAG AGAAAGATGA TTATCTCCCA ATCTTTCTAT 001520 001521 GTTATATGTT TGAATTAAAT AAGGTACTCT CCATGAA |
Predicted Small Protein
Name | ENST00000442669.2_smProtein_254:409 |
Length | 52 |
Molecular weight | 6122.8983 |
Aromaticity | 0.137254901961 |
Instability index | 63.337254902 |
Isoelectric point | 9.68902587891 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0423827188534 |
Amino acid sequence | MQCEAGAYVRRNAGRQFSHCNLHAHQFLVRRKQELQSVRWYFEAGLWVKDT |
Secondary structure | LLLLLLLLHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEELL |
PRMN | - |
PiMo | - |