ENST00000442996.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000442996.1

Source

Gencode19

Same with

lnc-SCRN3-3:1

Classification

overlapping(AS)

Length

2400 nt

Genomic location

chr2+:175411869..175639555

Exon number

4

Exons

175411869..175411976,175412097..175412205,175594449..175594552,175637477..175639555

Genome context

Sequence
000001 GCAGAGTTTT GAGGCAGAGC TGATCAAGGG AACCTCAACA AACAACCCCA GCCATGGAGG CGGCGGTGTC TTTGAAGACC 000080
000081 CCATGAGAGC ATCAAACAAG GGAGAGAGCC TGGAACAAAT CATGGTAGTA AAATGGCGGC AGAGAGCTAG TAATGTGTCT 000160
000161 GCAATTGGTG GGTTCTTGGT CGCACTGACT TCAAGAATGA AGCCGCGGAC CCTCACGGTG GTGTCTTTGG TGGCTGTTCA 000240
000241 CCCTTCCACA GTAAACATGC TTGGGAAGCA ACTTTGCCAA AAGCCTTCGG ACAGTCCAGC GTCAACACCG CAAGCCAAGT 000320
000321 GGAGGAGAAA AATCTGCGCC TCTTTCTCTC AAGGGATACT TTGTCTCTGG GGTACTTTCT GACCCAGTGG ACCCCTGGCA 000400
000401 GAAGTAAGCG TGGACTGTGG CTGCAGGACC ACGCAGAGTC AACACGAACC GAAGCCAGGC CTTGGCCACG GCAGCTCTGG 000480
000481 GGTCCAACCA CTTGATCAAT GCAGGAAATG CTTTGATGGC AGAATTCTTC CATGGCCAGC TTCTCATATT CTCTGGGACA 000560
000561 GACACAAACC AAGAAAAATG AGTGTGGCGC AGAATCTGAT GTGTCCTTCC TTACCCCGTG CTGGTAGCAA AAAGTATGTC 000640
000641 TTGAACTTTT CTTTGTTACA CACAGTCTGG GTAATAACAG ACTGAAGGAA AACTAAAGAA GCTTGGGAGG CTAAGTTCAA 000720
000721 TGACAAATGA AGAACTAAGG CAGAGAAAAA AGAGAATTGA GAAAGTGTCT GGGTGTCTGG AGAGGTTGGG GGAATAGAGA 000800
000801 GGGAGGAGAT ATAATTGGCC AGATAACTTG AGAGTGGGAG AGGAGTGCAA ACATTATTTT TGAGGCGCTT TGTTGGATAT 000880
000881 TTAAAATGCA CTCCTACCTT TGGCATTTTC TCAAAAGGCA AGAAAGATTT GTTTTCAATT CTATTTTTCT GCTGGACTGA 000960
000961 ACCAGTGCCA AGACTGGACC ATGTAGGATC CTGGGTTTAT TTCAGTTACA TAAGCAAACG TTGCTGTGAT TTGGAATAGT 001040
001041 CAAAGTCATG AATGTTTCTC AACTTCCATT TTGTCAGCTG CTTGAGTTTC TATTCTGAGA GGTGCTAACT GTGAACATTG 001120
001121 TTATTCACTT GTGTTCCCTA AATCACTTTT AATTAGTTTT AATTTGAACC AAGAATGTTC TACTGTTGAA ACTATGTCAA 001200
001201 GAATGATCAA AAATGAAATT AATAAAGAAT TCGCGTCAAA AAAAATTTGC ACTAATATTA CAGTATTTTA TAATGTCTAT 001280
001281 CTCAGCAGAG TCACAGATAA TTTAGAATTT TTAATTTTGT TTTTAAGTGA TTTTCCTCAA AGCTATAATA GCCTTGGTAA 001360
001361 AGAGTTTAGT TAAACATTAT TTTTCACCTC TCACGCATTT TGTGTAATGA AATTTTTCTA TCATCTTCCA GTGGAATTAA 001440
001441 TTGCATTGGT GCAAAAAATG CAATCAAATC GATGACTGAA TTTAGCCTTT GAAACCTCAC GTCTAGCTGG GATAGTTACT 001520
001521 ATATTCATTA CATACTGAAA AATGATAAGC AGTAAGCTTT TCTGCTAAAA AACTGCCAAA GATAAGTTTT TCAAGGCTCT 001600
001601 CAAAATATCC TAAAGCTGAC AATACAAGAA ATGTTAAAAT ATTGTTGGAA TTTTTAACGG AATCTTCCTT CTCTTCTTTT 001680
001681 CCTGTTTAAG ACAATAGTAG TTAGTTGTCC ACTAATCGTT AATACACGAT TTTCTAACAA AGACTTGCAT ATCCTTTTGG 001760
001761 CTAAAAAGTG GCCAAATATC AGAGAGCTAG AAGTTTGGGA GACAGCCTTT AGTCTTTTCC AAAGCATGTA AGCCCTTTTG 001840
001841 AATCATTTTG GGTAAATGGC GAAGATTAAA CAGAATTCAT AAAGGGTTTC TGATACATAA GTGGAATGTG CCTGTGAGGA 001920
001921 CACTACACAT GACAATAATC TAAGCATGCT CTCTTTTAGT CCCAAAACGT GTAGAGTAAT GTCACATGAA ATTTACAGGA 002000
002001 GGCCATTGAC TTGGACTGAG CTCCTGCACC AGGCCTAACA GACCAAACCA AAATGGAGTC ACTCATGCTG AAGTTCACAC 002080
002081 CACCAAGCCA AAACTGAGTT GTTTATCCGA TCTTCCAAGA AATCAAGAAA GACAGGGAGA TAACAGCCCA ATCCCCAAAC 002160
002161 AGGCCAGTTT TTGCTGGCAT GATAGGAAGG CCCCTCTGCT TCAAACTTTC CAAAGAAAGT AACTTGGAAA CAACCAATCT 002240
002241 GCTTTTTGTT CTCCGTTTCT GCTTTCCTCA ACCATTTTCT GACCATAAAA CCAACATCCT TTGCTCGGCT CATGGGAACA 002320
002321 TTCATTCTAT TTTGTAGAAT GAGGTGTTGC CCGATATTCT AGATTTGCAA ATAAAAGCCA ATTAAGATCT TTAAATTAAA 002400
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Predicted Small Protein

Name ENST00000442996.1_smProtein_1193:1372
Length 60
Molecular weight 6948.9449
Aromaticity 0.152542372881
Instability index 55.9645762712
Isoelectric point 7.85614013672
Runs 9
Runs residual 0.0080858342404
Runs probability 0.0408055113938
Amino acid sequence MSRMIKNEINKEFASKKICTNITVFYNVYLSRVTDNLEFLILFLSDFPQSYNSLGKEFS
Secondary structure LLLHHHHHHHHHHHLLLEEEEEEEEEEEEEEEELLLHHHHHHHHHHLLHHHHHHLLLLL
PRMN -
PiMo -