ENST00000462011.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000462011.1 |
Source |
Gencode19 |
Same with |
lnc-COL8A1-1:1,NONHSAT090845 |
Classification |
intergenic |
Length |
2305 nt |
Genomic location |
chr3+:99316908..99342664 |
Exon number |
2 |
Exons |
99316908..99317343,99340796..99342664 |
Genome context |
|
Sequence |
000001 AATGAGAAAT AAGAATTGGA CAGAGGGGGA AGTTGAACGT CAGTGTGCAA TTCTAACAGG TCTTAGCCAG TCCTTCAAGA 000080
000081 GCCCAGGAGC TAGAATGGCT CTTCCAAGTT TTCCAGAATT GAGACAAAAA GGCCAGGTCT TCGTACATCT GCATAGACCA 000160 000161 GTTCTTTGAT GTGAGCTAAC TCCAGTAAGA GGGTATAACC TTGAGCAAAG CAGCTCCCTT TATTCTAGAG CAATCTCCAA 000240 000241 AGTGGTACTC AGCCATGAAA TGTCTACAGC CAATACTTCT CGCAGGTGTG GAAATGCACG CTTCAGACCT GAAGGGGCAA 000320 000321 CGCAGAAGGC ATACCACAGC ATCCACCACA TGCTTCCACA ACAATAAAAA ATAGTTTGGA TATTACTTAG CTTAATAGTT 000400 000401 CGAAGATGTG TCTGTAAAAG TCAGCATAAT GTTCAGTGAC CAGCAACTGC TGAGATGGTA GCTGCTTCGT CAGGTACATG 000480 000481 AGTCCTCAGT TGACCCACAT GGATATATTG TTGTTTCTGT TTCTACAGCA AAACCTAGCC TTCCCTGACA TCCAAATCTC 000560 000561 CAAAGGACAA GTTGTATGTG AAAATGGTGA GCAGTACAAT TTAACTAGAA CATGCTAGGC CATGAGGAGC TAGAGGAGAT 000640 000641 AAAATCAGAA AGAGAACTGG AGGTCAGATA ATACAAACCC TTGAAATCCA GACTAGTCTA GAAGATATAT TGCAGGAGGA 000720 000721 AGGTACTACA GATGGAAAAA AACAATTAGG TTGGTAAGCC CAAAGAAATG TGTCAGGAAA GAAACAAAAA ACAAAAAAAT 000800 000801 TCTCAGTTAA TATCAGATAT TGAGGCATGG ATGATGTCTT CATTTTGAGA TCCAAGCGAC AGGGTTGAAA GTAGATAATG 000880 000881 AGGTCAAAAC AGAGAGGCCA CTAGGCAGGA AATGCCATAA CCAATCAGGA AGCTGCTTAA AGCCCATGGC TAGGAGGAAA 000960 000961 GTTGTATTAG TTTTCTCTTG CTGCTATATC AAATTATTAC AAGCTTGGTG GCTTAAAACA ACATAAACAT TATCTTACAG 001040 001041 GGCTGTAAAT TAGCAGTCTG ACATGCATCT CACTGGCTAA AATGAAGGCA TCAACAAAGC TGTATTTCTC AAGACTCTAG 001120 001121 GGAGTAATCC ATTTCCTTGC CTCTTCTAGT TTCTTAAGGC CACCTGCATT ACTTGGCTCA TGGAACCTTT TCTCCATCTT 001200 001201 TAAAGTCAGC AAGGCGGAAT CTCTCTGACC GTCTTCATTT TTGACAACTT CTTTGACTAC AGCTAAGAAT GGGGTGGAGT 001280 001281 GGAAATATTT TGAAGGGATA ATGGTGATGA GATTGTGTCC ATCTGGAGAA TCCCAGATAA ACTCCCACTT TAAGACTTAT 001360 001361 AACTCAATCT CATCTGCAAA GGTAACATAT GTATCAAGGG ATCTAAGGGT TAGGATGTGG CCACCCTTAG GAGGCCATTA 001440 001441 TTCTGCCTGC CATCATAGCC AAGCATTAGG AATGAGGAAC ACACTCAAAA TATCAAGAAA CAAAAGTATG GTACTGGACA 001520 001521 GGGGAATGCT CAGTTCTAAT GTATTCTGAA CTACTGTGGG TCAGACCTGT GTACAATGGC TCTTGTCTTA AGGCCCGTAA 001600 001601 AGGGCAAGTT CAGTGGTCTA AATGAGAAGT GATTCACTGG CCTGAACTCT GCCAGTAATG GGGAATGGAA TATTATAGAC 001680 001681 AGCAGTGCCC ATGGTGCCCT GAGACTGACT ATTCCTTTGC CTCAATAAGT GCAAGCTGAA TGAATGAATT GATGAGTGAG 001760 001761 ATGTCAATCA AATAAACAGG ACTGAACAAC AGTCTGGATA CAGAAGGCAG AAAAGGGGAA AGGATTTTTA GAAACTTTAA 001840 001841 CAGTCAATGA AGCAGCTAGG AGAGGTACAA GGCTAGATAC TAAAAAAAAC ATGGAAGAGC GAAGGATGGA ATTTCTTAAC 001920 001921 TGAGTTCTGA AAGTGGCACT TCTTTCAGAA TTTAATTTAT TTTACATAGA TGAAGGGAAT ACACTGTCAA ATAGATATAA 002000 002001 GCTAGAGAAA TGTAAAATAA TTGTATGAAT TATACACTTA GAAAAGGATC ATCGGCCAGA TGTTTTGCAG GAAACCAAAA 002080 002081 ACTAGACATA GGGAAACTAG ACATAAAAAA GGATTGAGGG AACTTTTAAT TAGGAGAGTA AGATCATTTT TAAATGCATT 002160 002161 TTTATCTGTG AATAAATCTG AATGGATAAG ACCATGTTTT AATTATGAAA CAGGAGACTT GGGATGGAGC AAGACAGTGG 002240 002241 AATAGAAGGC ACTACAAATT GCTCCCATCC CCACCCAGGA CACCAATTTA ACAACTATCT ACACC |
Predicted Small Protein
Name | ENST00000462011.1_smProtein_254:373 |
Length | 40 |
Molecular weight | 4423.1368 |
Aromaticity | 0.025641025641 |
Instability index | 87.7743589744 |
Isoelectric point | 10.0560913086 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0482246952835 |
Amino acid sequence | MKCLQPILLAGVEMHASDLKGQRRRHTTASTTCFHNNKK |
Secondary structure | LLLLHHHHHHLLHHHHHHHLLLLLLLLLLLLLEEELLLL |
PRMN | - |
PiMo | - |