ENST00000462011.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000462011.1

Source

Gencode19

Same with

lnc-COL8A1-1:1,NONHSAT090845

Classification

intergenic

Length

2305 nt

Genomic location

chr3+:99316908..99342664

Exon number

2

Exons

99316908..99317343,99340796..99342664

Genome context

Sequence
000001 AATGAGAAAT AAGAATTGGA CAGAGGGGGA AGTTGAACGT CAGTGTGCAA TTCTAACAGG TCTTAGCCAG TCCTTCAAGA 000080
000081 GCCCAGGAGC TAGAATGGCT CTTCCAAGTT TTCCAGAATT GAGACAAAAA GGCCAGGTCT TCGTACATCT GCATAGACCA 000160
000161 GTTCTTTGAT GTGAGCTAAC TCCAGTAAGA GGGTATAACC TTGAGCAAAG CAGCTCCCTT TATTCTAGAG CAATCTCCAA 000240
000241 AGTGGTACTC AGCCATGAAA TGTCTACAGC CAATACTTCT CGCAGGTGTG GAAATGCACG CTTCAGACCT GAAGGGGCAA 000320
000321 CGCAGAAGGC ATACCACAGC ATCCACCACA TGCTTCCACA ACAATAAAAA ATAGTTTGGA TATTACTTAG CTTAATAGTT 000400
000401 CGAAGATGTG TCTGTAAAAG TCAGCATAAT GTTCAGTGAC CAGCAACTGC TGAGATGGTA GCTGCTTCGT CAGGTACATG 000480
000481 AGTCCTCAGT TGACCCACAT GGATATATTG TTGTTTCTGT TTCTACAGCA AAACCTAGCC TTCCCTGACA TCCAAATCTC 000560
000561 CAAAGGACAA GTTGTATGTG AAAATGGTGA GCAGTACAAT TTAACTAGAA CATGCTAGGC CATGAGGAGC TAGAGGAGAT 000640
000641 AAAATCAGAA AGAGAACTGG AGGTCAGATA ATACAAACCC TTGAAATCCA GACTAGTCTA GAAGATATAT TGCAGGAGGA 000720
000721 AGGTACTACA GATGGAAAAA AACAATTAGG TTGGTAAGCC CAAAGAAATG TGTCAGGAAA GAAACAAAAA ACAAAAAAAT 000800
000801 TCTCAGTTAA TATCAGATAT TGAGGCATGG ATGATGTCTT CATTTTGAGA TCCAAGCGAC AGGGTTGAAA GTAGATAATG 000880
000881 AGGTCAAAAC AGAGAGGCCA CTAGGCAGGA AATGCCATAA CCAATCAGGA AGCTGCTTAA AGCCCATGGC TAGGAGGAAA 000960
000961 GTTGTATTAG TTTTCTCTTG CTGCTATATC AAATTATTAC AAGCTTGGTG GCTTAAAACA ACATAAACAT TATCTTACAG 001040
001041 GGCTGTAAAT TAGCAGTCTG ACATGCATCT CACTGGCTAA AATGAAGGCA TCAACAAAGC TGTATTTCTC AAGACTCTAG 001120
001121 GGAGTAATCC ATTTCCTTGC CTCTTCTAGT TTCTTAAGGC CACCTGCATT ACTTGGCTCA TGGAACCTTT TCTCCATCTT 001200
001201 TAAAGTCAGC AAGGCGGAAT CTCTCTGACC GTCTTCATTT TTGACAACTT CTTTGACTAC AGCTAAGAAT GGGGTGGAGT 001280
001281 GGAAATATTT TGAAGGGATA ATGGTGATGA GATTGTGTCC ATCTGGAGAA TCCCAGATAA ACTCCCACTT TAAGACTTAT 001360
001361 AACTCAATCT CATCTGCAAA GGTAACATAT GTATCAAGGG ATCTAAGGGT TAGGATGTGG CCACCCTTAG GAGGCCATTA 001440
001441 TTCTGCCTGC CATCATAGCC AAGCATTAGG AATGAGGAAC ACACTCAAAA TATCAAGAAA CAAAAGTATG GTACTGGACA 001520
001521 GGGGAATGCT CAGTTCTAAT GTATTCTGAA CTACTGTGGG TCAGACCTGT GTACAATGGC TCTTGTCTTA AGGCCCGTAA 001600
001601 AGGGCAAGTT CAGTGGTCTA AATGAGAAGT GATTCACTGG CCTGAACTCT GCCAGTAATG GGGAATGGAA TATTATAGAC 001680
001681 AGCAGTGCCC ATGGTGCCCT GAGACTGACT ATTCCTTTGC CTCAATAAGT GCAAGCTGAA TGAATGAATT GATGAGTGAG 001760
001761 ATGTCAATCA AATAAACAGG ACTGAACAAC AGTCTGGATA CAGAAGGCAG AAAAGGGGAA AGGATTTTTA GAAACTTTAA 001840
001841 CAGTCAATGA AGCAGCTAGG AGAGGTACAA GGCTAGATAC TAAAAAAAAC ATGGAAGAGC GAAGGATGGA ATTTCTTAAC 001920
001921 TGAGTTCTGA AAGTGGCACT TCTTTCAGAA TTTAATTTAT TTTACATAGA TGAAGGGAAT ACACTGTCAA ATAGATATAA 002000
002001 GCTAGAGAAA TGTAAAATAA TTGTATGAAT TATACACTTA GAAAAGGATC ATCGGCCAGA TGTTTTGCAG GAAACCAAAA 002080
002081 ACTAGACATA GGGAAACTAG ACATAAAAAA GGATTGAGGG AACTTTTAAT TAGGAGAGTA AGATCATTTT TAAATGCATT 002160
002161 TTTATCTGTG AATAAATCTG AATGGATAAG ACCATGTTTT AATTATGAAA CAGGAGACTT GGGATGGAGC AAGACAGTGG 002240
002241 AATAGAAGGC ACTACAAATT GCTCCCATCC CCACCCAGGA CACCAATTTA ACAACTATCT ACACC
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Predicted Small Protein

Name ENST00000462011.1_smProtein_254:373
Length 40
Molecular weight 4423.1368
Aromaticity 0.025641025641
Instability index 87.7743589744
Isoelectric point 10.0560913086
Runs 7
Runs residual 0.0107466063348
Runs probability 0.0482246952835
Amino acid sequence MKCLQPILLAGVEMHASDLKGQRRRHTTASTTCFHNNKK
Secondary structure LLLLHHHHHHLLHHHHHHHLLLLLLLLLLLLLEEELLLL
PRMN -
PiMo -