ENST00000476886.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000476886.1

Source

Gencode19

Same with

lnc-MED12L-1:1

Classification

overlapping(AS)

Length

2223 nt

Genomic location

chr3+:150570271..150798513

Exon number

5

Exons

150570271..150570393,150780713..150780790,150782800..150782863,150784097..150784216,150796676..150798513

Genome context

Sequence
000001 AGCTCAGCTG GAGTGCAAGC TGGGAATGCA GTCAAGGCTT CATCCACCCC AGGCAGCTTT CCTGAGCCTT GGGAGACTGG 000080
000081 CTCTCAATGA ATCCAAGCTG CTTTTATCCT TTGCTGCCTA TCTAGTCTTG TTAACAACAA AGAAGAGGAG AATGGAGATT 000160
000161 GAGCAACCAG GAAGCAGTCT CAGCCACACC ATCATATGGA GAAGTGCCTG TTTCCCATTC TGCCCGATTT TAAGTTTCCT 000240
000241 GAGGCACCCC CAGCCATGCA GAACTCTCTG GTGCCTGGCC CACAGGAAGT TTTCACTAAA TATTGAAATA AACTGAACTT 000320
000321 AGATTAAACT TTGGTGTCTA ACTTAGGAAA AACAACAAGA GTTCTACAAA ACTATTTCTT CACAGGAAAG TCTGAAGCCA 000400
000401 GGCCTGCTTA GCAGAGGTCT CCGTATAGTA GGGATCTCAC TCTTTCAAGA TGTAGGATCT CAACTGGTTA GCCAGCCCTC 000480
000481 TGAGTGAAGC TGGTCAGTTG GGGCTGTGAC AACATAGCAC ACTCAAAGGG GCAGACCCTT CTCAGCTCCA ACAGATTGGT 000560
000561 GTCATTGGAA AAGGTGGACC CAGTGTAGGC AGACTTTCCT AGAGAGTCCA GAAGTGACTG TGCAAGCCCA AAGCAATCCA 000640
000641 AACAAATATT TGTGGACCAC CAAGAACCTC TGGTATGAAG TAAATAATAA AGGCATTGAA CAATAATAAC CTGTCTGTAT 000720
000721 ATCCACCAAT GGGACCGATG GGCCACAGTG TGACATCTAT CCTATTCATG TCATAAGGGA GATGAATTCT ACTGTGGGAC 000800
000801 AGTCTGTGTG ACTGCTCGTA GGAGATTATC CAATTCCTTT TGCTCTAATT TCATGGTCAC CAAATTTCTG CTTGCTAACT 000880
000881 TTGTTTTACA ACAAACTTTA GAAAGGAGGT GATCTGAATA AGAGGATATA TGTTTTTCAG TCTCTGGAAA GGGGTATTTC 000960
000961 TTTGTATTGA GAAGCCAGAA CTCTTGAGTG TGTTGAGCCT TGTAGAGATT GAACCACTCT GGGTCAGCTG ACAAAATAAG 001040
001041 ATTCTGGTGC TGAAAAGCTG AGTATGTGAC CATGATATTA ACAGTGACCT AAGTTTGTGT GGCCCCCTTC GTTCTCCAGA 001120
001121 AACCAACCAG TCAGCCTTCA TTTTGTAAAT GTAGCAGACA CCATTTTGCT AGTGAATGAG GTTAAATCTT TAGCCTTGTC 001200
001201 ATTGGTTCGG CTTTGTAATT TAAAACTCTC TTATTTTACC CTCTGATTTT AAATCCCCAG ATTTTCCTTT CTGTGTCCTT 001280
001281 TGCCCCCTGA AGTTTCCATC TGTCTAGCAA CTAAGCACTG TTTGGGTATC TACTGTCTTC CCCAAGTTGC CTTTACTTTT 001360
001361 CTTCTTTACC TTTCTCTTGT TTTATTTATT TCTTTCTTTT TTTGAAATGG AGTCTTGCTC TGTCACCCAG GCGGGAATGC 001440
001441 AGTGGCGCAA TCTCGGCTCA TTGCAACCTC CACCTCCCGG GTTCAAGCAG TTCTCCTGCC TCAGCCTAAT GAGTAGCTGG 001520
001521 AATTACAGGT GTGCACCCCC ATACCTGACT AAGTTTTGTA TTTTCAGTAG AGACGGGGTT TCACCATGTT GGCCGGGCTG 001600
001601 GACTTGAACT CCTAACCTCA GGTGATCCGC CCTCCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCATGAG CCACCACACA 001680
001681 CAGCCTCTCT TGTTTTACTT CTGTCATTAC TTTTTGTTCT TTTAATTTGG AAACCCACCT GCTTCCTCAG TGTCATTATT 001760
001761 AAAAACCCAC ATGTTACAGG TTCATTAGGA CTGAAACATT CCTTCAGAGC TGAGCTGACC AACATGTTAG CCACTAGCCA 001840
001841 CATGTGACTA TTGCATACAT GAAATGCAAA ATGTGGCTGG TCTGAAATGA TGGTATAGGT ATGAAATTCA CACAAGATTT 001920
001921 AGAATACTGA AGATAAAAAA GAATGTAAAG TATCTCATTA ATACTTTTTT TGGTATTGAT CACCTATTGA AATGGTAATA 002000
002001 TTTGGTTATA CTGGCTTAAG CAAATGTACA TTAAAATTAA TTTCATCTAT TTCTTTTTAC TTCTTTAATA CCAGAAAATG 002080
002081 TAAAAGTACC TATCTGGCAA GCAATATAAA ACTATTGGTC AGTGCTACTT GAGAGTCTTA ATGTCTGTAT TTTTTATATC 002160
002161 TCTGTAAGCA TAAATGCTGT ATTAAAAACC CAATTTGAAT AAACACCCCC AAATTACTCT TCC
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Predicted Small Protein

Name ENST00000476886.1_smProtein_1406:1606
Length 67
Molecular weight 7465.573
Aromaticity 0.151515151515
Instability index 66.9696969697
Isoelectric point 8.75103759766
Runs 9
Runs residual 0.0142442387951
Runs probability 0.0381361753911
Amino acid sequence MESCSVTQAGMQWRNLGSLQPPPPGFKQFSCLSLMSSWNYRCAPPYLTKFCIFSRDGVSP
CWPGWT
Secondary structure LLLLLLLLLLLLHHHLLLLLLLLLLLLEEEEEEEELLLLEEELLLLLLEEEEEELLLLLL
LLLLLL
PRMN -
PiMo -