ENST00000476886.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000476886.1 |
Source |
Gencode19 |
Same with |
lnc-MED12L-1:1 |
Classification |
overlapping(AS) |
Length |
2223 nt |
Genomic location |
chr3+:150570271..150798513 |
Exon number |
5 |
Exons |
150570271..150570393,150780713..150780790,150782800..150782863,150784097..150784216,150796676..150798513 |
Genome context |
|
Sequence |
000001 AGCTCAGCTG GAGTGCAAGC TGGGAATGCA GTCAAGGCTT CATCCACCCC AGGCAGCTTT CCTGAGCCTT GGGAGACTGG 000080
000081 CTCTCAATGA ATCCAAGCTG CTTTTATCCT TTGCTGCCTA TCTAGTCTTG TTAACAACAA AGAAGAGGAG AATGGAGATT 000160 000161 GAGCAACCAG GAAGCAGTCT CAGCCACACC ATCATATGGA GAAGTGCCTG TTTCCCATTC TGCCCGATTT TAAGTTTCCT 000240 000241 GAGGCACCCC CAGCCATGCA GAACTCTCTG GTGCCTGGCC CACAGGAAGT TTTCACTAAA TATTGAAATA AACTGAACTT 000320 000321 AGATTAAACT TTGGTGTCTA ACTTAGGAAA AACAACAAGA GTTCTACAAA ACTATTTCTT CACAGGAAAG TCTGAAGCCA 000400 000401 GGCCTGCTTA GCAGAGGTCT CCGTATAGTA GGGATCTCAC TCTTTCAAGA TGTAGGATCT CAACTGGTTA GCCAGCCCTC 000480 000481 TGAGTGAAGC TGGTCAGTTG GGGCTGTGAC AACATAGCAC ACTCAAAGGG GCAGACCCTT CTCAGCTCCA ACAGATTGGT 000560 000561 GTCATTGGAA AAGGTGGACC CAGTGTAGGC AGACTTTCCT AGAGAGTCCA GAAGTGACTG TGCAAGCCCA AAGCAATCCA 000640 000641 AACAAATATT TGTGGACCAC CAAGAACCTC TGGTATGAAG TAAATAATAA AGGCATTGAA CAATAATAAC CTGTCTGTAT 000720 000721 ATCCACCAAT GGGACCGATG GGCCACAGTG TGACATCTAT CCTATTCATG TCATAAGGGA GATGAATTCT ACTGTGGGAC 000800 000801 AGTCTGTGTG ACTGCTCGTA GGAGATTATC CAATTCCTTT TGCTCTAATT TCATGGTCAC CAAATTTCTG CTTGCTAACT 000880 000881 TTGTTTTACA ACAAACTTTA GAAAGGAGGT GATCTGAATA AGAGGATATA TGTTTTTCAG TCTCTGGAAA GGGGTATTTC 000960 000961 TTTGTATTGA GAAGCCAGAA CTCTTGAGTG TGTTGAGCCT TGTAGAGATT GAACCACTCT GGGTCAGCTG ACAAAATAAG 001040 001041 ATTCTGGTGC TGAAAAGCTG AGTATGTGAC CATGATATTA ACAGTGACCT AAGTTTGTGT GGCCCCCTTC GTTCTCCAGA 001120 001121 AACCAACCAG TCAGCCTTCA TTTTGTAAAT GTAGCAGACA CCATTTTGCT AGTGAATGAG GTTAAATCTT TAGCCTTGTC 001200 001201 ATTGGTTCGG CTTTGTAATT TAAAACTCTC TTATTTTACC CTCTGATTTT AAATCCCCAG ATTTTCCTTT CTGTGTCCTT 001280 001281 TGCCCCCTGA AGTTTCCATC TGTCTAGCAA CTAAGCACTG TTTGGGTATC TACTGTCTTC CCCAAGTTGC CTTTACTTTT 001360 001361 CTTCTTTACC TTTCTCTTGT TTTATTTATT TCTTTCTTTT TTTGAAATGG AGTCTTGCTC TGTCACCCAG GCGGGAATGC 001440 001441 AGTGGCGCAA TCTCGGCTCA TTGCAACCTC CACCTCCCGG GTTCAAGCAG TTCTCCTGCC TCAGCCTAAT GAGTAGCTGG 001520 001521 AATTACAGGT GTGCACCCCC ATACCTGACT AAGTTTTGTA TTTTCAGTAG AGACGGGGTT TCACCATGTT GGCCGGGCTG 001600 001601 GACTTGAACT CCTAACCTCA GGTGATCCGC CCTCCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCATGAG CCACCACACA 001680 001681 CAGCCTCTCT TGTTTTACTT CTGTCATTAC TTTTTGTTCT TTTAATTTGG AAACCCACCT GCTTCCTCAG TGTCATTATT 001760 001761 AAAAACCCAC ATGTTACAGG TTCATTAGGA CTGAAACATT CCTTCAGAGC TGAGCTGACC AACATGTTAG CCACTAGCCA 001840 001841 CATGTGACTA TTGCATACAT GAAATGCAAA ATGTGGCTGG TCTGAAATGA TGGTATAGGT ATGAAATTCA CACAAGATTT 001920 001921 AGAATACTGA AGATAAAAAA GAATGTAAAG TATCTCATTA ATACTTTTTT TGGTATTGAT CACCTATTGA AATGGTAATA 002000 002001 TTTGGTTATA CTGGCTTAAG CAAATGTACA TTAAAATTAA TTTCATCTAT TTCTTTTTAC TTCTTTAATA CCAGAAAATG 002080 002081 TAAAAGTACC TATCTGGCAA GCAATATAAA ACTATTGGTC AGTGCTACTT GAGAGTCTTA ATGTCTGTAT TTTTTATATC 002160 002161 TCTGTAAGCA TAAATGCTGT ATTAAAAACC CAATTTGAAT AAACACCCCC AAATTACTCT TCC |
Predicted Small Protein
Name | ENST00000476886.1_smProtein_1406:1606 |
Length | 67 |
Molecular weight | 7465.573 |
Aromaticity | 0.151515151515 |
Instability index | 66.9696969697 |
Isoelectric point | 8.75103759766 |
Runs | 9 |
Runs residual | 0.0142442387951 |
Runs probability | 0.0381361753911 |
Amino acid sequence | MESCSVTQAGMQWRNLGSLQPPPPGFKQFSCLSLMSSWNYRCAPPYLTKFCIFSRDGVSP CWPGWT |
Secondary structure | LLLLLLLLLLLLHHHLLLLLLLLLLLLEEEEEEEELLLLEEELLLLLLEEEEEELLLLLL LLLLLL |
PRMN | - |
PiMo | - |