ENST00000478239.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000478239.1 |
Source |
Gencode19 |
Same with |
lnc-GBE1-3:2,NONHSAT090611 |
Classification |
intergenic |
Length |
561 nt |
Genomic location |
chr3-:81295730..81304680 |
Exon number |
4 |
Exons |
81295730..81295809,81296792..81296991,81301283..81301396,81304514..81304680 |
Genome context |
|
Sequence |
000001 TGAAGCTCAG TGCCTGCTCG CAATCCTGGC TGTGCCTACA GTGTTTTACT CAACAAGTTC TGGATAATCT CTCCTGAGCT 000080
000081 TGTCAATGAT ACCAGAGGTG GAATGGATGG TGGTACAGAG CAAGGCTATG GAATCTGAAG GTGGTGGTCA TCACCCTCAC 000160 000161 TTGTTGTATG GAGTCTTGCT CTGTTGCCCA GGCTGGAGCA CAATCTCAGT TCACTGAAAC CTCCGCCTCC TGGATTCAAG 000240 000241 CAATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTGCA GCTACAATGC CACCAGGTGA TCGGAATTTT TCAGCTCCAT 000320 000321 TAAAATCTTA TGAGACCATC ACTGAATATG TGGTCCGTCA TTGACCAAAA CATCATGATG CAGCTCATGA CTATAGTTCT 000400 000401 GTCTCAGAAG ATCCAGGAAA TAGTAGGTTC CTCCGAGGCC GGAAGCCCAT TCAGTATCTT AGCCAATGGC ATGTCTTATA 000480 000481 GACTAAGATT CAGCTCTCTT CAGACTAAGA TCACAGCTTG GGTGTGATTT GATCCTGCTT CAAGCTGGCA AAGCCTCAGA 000560 000561 A |
Predicted Small Protein
Name | ENST00000478239.1_smProtein_329:526 |
Length | 66 |
Molecular weight | 7336.5783 |
Aromaticity | 0.0769230769231 |
Instability index | 51.7784615385 |
Isoelectric point | 9.69073486328 |
Runs | 10 |
Runs residual | 0.00355769230769 |
Runs probability | 0.0383059530118 |
Amino acid sequence | MRPSLNMWSVIDQNIMMQLMTIVLSQKIQEIVGSSEAGSPFSILANGMSYRLRFSSLQTK ITAWV |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHHHHHHHEEELLLLLLLLEEEELLLLEEEEEEELLLEE EEEEL |
PRMN | - |
PiMo | - |