ENST00000478239.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000478239.1

Source

Gencode19

Same with

lnc-GBE1-3:2,NONHSAT090611

Classification

intergenic

Length

561 nt

Genomic location

chr3-:81295730..81304680

Exon number

4

Exons

81295730..81295809,81296792..81296991,81301283..81301396,81304514..81304680

Genome context

Sequence
000001 TGAAGCTCAG TGCCTGCTCG CAATCCTGGC TGTGCCTACA GTGTTTTACT CAACAAGTTC TGGATAATCT CTCCTGAGCT 000080
000081 TGTCAATGAT ACCAGAGGTG GAATGGATGG TGGTACAGAG CAAGGCTATG GAATCTGAAG GTGGTGGTCA TCACCCTCAC 000160
000161 TTGTTGTATG GAGTCTTGCT CTGTTGCCCA GGCTGGAGCA CAATCTCAGT TCACTGAAAC CTCCGCCTCC TGGATTCAAG 000240
000241 CAATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTGCA GCTACAATGC CACCAGGTGA TCGGAATTTT TCAGCTCCAT 000320
000321 TAAAATCTTA TGAGACCATC ACTGAATATG TGGTCCGTCA TTGACCAAAA CATCATGATG CAGCTCATGA CTATAGTTCT 000400
000401 GTCTCAGAAG ATCCAGGAAA TAGTAGGTTC CTCCGAGGCC GGAAGCCCAT TCAGTATCTT AGCCAATGGC ATGTCTTATA 000480
000481 GACTAAGATT CAGCTCTCTT CAGACTAAGA TCACAGCTTG GGTGTGATTT GATCCTGCTT CAAGCTGGCA AAGCCTCAGA 000560
000561 A
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Predicted Small Protein

Name ENST00000478239.1_smProtein_329:526
Length 66
Molecular weight 7336.5783
Aromaticity 0.0769230769231
Instability index 51.7784615385
Isoelectric point 9.69073486328
Runs 10
Runs residual 0.00355769230769
Runs probability 0.0383059530118
Amino acid sequence MRPSLNMWSVIDQNIMMQLMTIVLSQKIQEIVGSSEAGSPFSILANGMSYRLRFSSLQTK
ITAWV
Secondary structure LLLLLLHHHHHHHHHHHHHHHHHHHHHHHEEELLLLLLLLEEEELLLLEEEEEEELLLEE
EEEEL
PRMN -
PiMo -