ENST00000488852.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000488852.1 |
Source |
Gencode19 |
Same with |
lnc-CD47-2:7 |
Classification |
intergenic |
Length |
1197 nt |
Genomic location |
chr3-:107560509..107596923 |
Exon number |
8 |
Exons |
107560509..107560866,107560952..107561059,107562523..107562626,107567753..107567965,107575927..107576049,107591815..107591873,107594977..107595033,107596749..107596923 |
Genome context |
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Sequence |
000001 ATAGCAACAG CAGCGTAGCT GAACATCTTA CGGATGGCCC AGGGCTCCAA AGGCTCGTTT CCTAAGTGAG AGAGAGCCTG 000080
000081 GCTGAAGCTG TATTACCATT CATTCTCCAG CCTCCGAAGT CTCAAAGCAT CACTTCCACC ATACTCTAAC TGTCAAGACA 000160 000161 AACACAAAGG CCCAGAAACT GCCAGACTGT CTTCTGAAGT GGCTATAATA TTTACACTCC CATCAGCAGT GTAGAAGGGG 000240 000241 TCTCACTATG TTGTCTGGAG TGCTGTGGTG GAGTGGAGTG GCTATTCACA GAGCCTGTTC TGCTGGGACA CAGAATCACT 000320 000321 TGCTCCATCT CATACATTGA TGATGATTAA TTTGTATGTG TACCTTCCAA AAAAGATGGT TGTGTTTGAA TGGAGGCCTT 000400 000401 CTGGACAGGA AAATAATCAC ATCCTTCCTG AGATAATGAG CACACAATTG CCTGGATACC TGAAGGAATG GAGACAGCGG 000480 000481 CAGAAAACAC TGCAGAGAGG TGGAAACATC CGTTAATATT TTAAAATCCC ATTACTGCTA CCAACAATAA TAATGGATGC 000560 000561 ATAGAAATAG ATCTGGATTA GCTGAGCTTG AAACAGTCCA TCTCACACAC ACACAAAAGA ATTTCAGATA CAGTGAACCC 000640 000641 ACATGTTGAA GCTTTCTAGT ATAATAAAAA TTTCAACTGT TCTGTTGAAT CATCTGCCTG ATTGGAGGCT ACAGAAAAGA 000720 000721 TGTCATCTTA GGAGTGCTTG CTCTGAGTGA GGCTCATCTT CAAATCTGAA TGACCACAAG GAGATTTGAT TATACATGTG 000800 000801 AACACCTCAG AAGGCACAGC CCACCCAGAA GGCAGACAGA AGAAGCTGCC AGGAAGACTG TGAAATCTTC ATGCCCAAGG 000880 000881 ATCCCTAAAA TTAGGAGCAA CAACCACTTG GCTCAGACGG TTTATGGAGG CAAAGGTTTG GATGGGATTA GAGATTTCTA 000960 000961 AATGTGAGTT CGTGTCCTCT GCCAGACCAC CTTACTTCCA CCATTCCTCA GCAAATCAAG AAAAACAGGA GAAAAGACAT 001040 001041 GCCTTTCCAT AAGTTAAATC TATTCTGTTT TAATTCTATA TTATATCTGC TGTACAACTT CTTTTGTTTG TAACACCATA 001120 001121 TTGTTGCTAG TAACTGGAAA TTAATTTTCA CATGCCTCAG CTTAGAAAAA TAAAAAGCAG CCCTGCATCA ATCCCAA |
Predicted Small Protein
Name | ENST00000488852.1_smProtein_923:1051 |
Length | 43 |
Molecular weight | 4919.5364 |
Aromaticity | 0.119047619048 |
Instability index | 66.2452380952 |
Isoelectric point | 7.96453857422 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0230328367584 |
Amino acid sequence | MEAKVWMGLEISKCEFVSSARPPYFHHSSANQEKQEKRHAFP |
Secondary structure | LLEEEEELLEEELLEEELLLLLLLLLLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |