ENST00000498997.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000498997.2 |
Source |
Gencode19 |
Same with |
lnc-AF131216.6.1-1:1,NONHSAT125046 |
Classification |
antisense |
Length |
5850 nt |
Genomic location |
chr8-:11173374..11182938 |
Exon number |
2 |
Exons |
11173374..11179109,11182825..11182938 |
Genome context |
|
Sequence |
000001 CATTCTCTTC ATTCAAGTGT TTAACAGCAC ATTTATCAAA GGCAGCTCTC CGATGCAATG TTTAACGAGT GTCTTCTCAG 000080
000081 GAGTGTATCC GTGTCATTTA TTCTTCTCAT CCAGCTCTAG GTTGAGGAGC ATGAAACACA CACTGAAACT CCGGCATGGC 000160 000161 AGGACTTAAT CCACAGAACA AGGATTTCAT CCCATCACTT ATCTCTAAGC TCCACAAGGA GGTTTGGTAC AAAGCAATTA 000240 000241 AATCATCCTT CAGGCCACCC AGCTCCCAAT GTGGGTTTTC TCCCAAACAG CTACGCTCAT TTCAGTTATT AAATGTGACA 000320 000321 GTGGCTTTAA GTACATTGTC CCAGAAGTCC TAAACAGGAA GAATACTGTA ACCTCTCGTT TAAGAGATCA TGAACCCTGT 000400 000401 ACTGACTGTG ACGACAATCA CGAAAGTAAG CAAAGAGAAG TTCTGAGCAG TCACCATCCC TTCACAAATC AAAGCACTAA 000480 000481 AGCTCACACC CAGAACCTCA AGACCATCTA AGACCATTTC CCCACAATGC TAACTAGGGG ACACTTCAAT AGATAAGATT 000560 000561 AGAAGCATGA ACTGAGGTGG AAGGAAGCCA CTAATGGCAG ATAAGCCAAG AGGAACTAGA TGTGACAGCT GACATCCAGA 000640 000641 GAAGAGACAG AAACTGATTT GGTCTCAGAC TCAGAAGCCA AAGCAATCTG AGACCCGTTT CCACAAAGGG CAAATAGTTT 000720 000721 TCCACACGTG AACTGCCTTT GAGAGTATAA CATACTAGAA TACGGCGTAA CAACTGGCAT TAACGGTAAT TCGGTTTAAT 000800 000801 TTAACAAACA GCTACCATTC TTGTATGTAT ACTTTATGCT ATTAAACATA AACATGAATA AATGTGTGCT TATTATCTTC 000880 000881 AAAATAACTT TAAAAATTAA ATGGTATTTT AGAGGCTTTG TTTAATGAAA CACTATATAG TTCAGATAGA TTTTGGTTAT 000960 000961 TTTTATCTTT ATTTTTATCT TTTTGAGAAA GTCTCGTTGT GTCACCCTGG CTAAAGTGCA GTAGCATCAT CTCTGCTCAC 001040 001041 TGCAACCTTT GCCTCCCAGA TTCAAGTGAT TCTCCTGCCT CAGCCTCCTG AGTAGCTGGG GCTACAGACC CGCACCACCA 001120 001121 AATTGGCCTG TTTAATTTTT GTATTTTCAG TAGAGATGGG GTTTCACCAT GTTGGCCAGC CTGGTCTTGA ACTTCTGACC 001200 001201 TCAAGTGATC CACTCACCTG AGCCTCCCAA TGTGCTGGGA TTACAGGCGT GAGCCACCAC ACCTGGCCAG ATTTTGGTTA 001280 001281 TGTTTTAATT AATAAGCTTC CATACTTAAG GGGATAAGCT TCAATAGTTG GAAAAATCAG TGCATATAAA AAATCTACTT 001360 001361 TAGAATAGAT TTAAAAATTA AGCATATAGT CCCATAAGAA CAATGAAATA TCTGTGTTAC TGCACTGATG GTATTTTGTG 001440 001441 CCCATTTATA GAAACTTACT GGAATGCCCA GCCATGTAAC TCTTTAATAC CATTTAATAC AAGAACCTAT CCTAATGACT 001520 001521 GCTTCATTAA GGGACAGAAA CTCTCCCTGA TGAGCTTACA ATTTATTCAT GTCCCAACTA CTTACCAACT CTCTTAGGCA 001600 001601 AAGAGTAAGG TACTTTCTTA TCTAGAAAAA TATCCAACAT AAACAGCAAT GTAAAGAAAC ACTGTTAATT TCTCAATGGT 001680 001681 AACTGAAAAA AAAAAAAAGT GTGGCTAGAT AACTGATTTG AAAGAGAAAA ACATGCCCAC ACTGAGAATG ACAATTCACA 001760 001761 CAGGTCTGAG GGCCACGTCC AGCTCACCAT CTTCATACAT CACCAACAGC ACACACTCAC AGGCAGCCGC ATGCACACCT 001840 001841 GACCGTTAAG AAGTTTGCAA AGGATGCGTG GTTTACCTTC CCACAGTGGA AGACTCTGCG GAGCAACTGA AGGCCAGATG 001920 001921 ACAAGGTTGT TGGCTTCAAA GAGGGGATTG GTGAATTTAC TCAGCTCACT GGGCTGATTA ACCCAGGACC ACAAAGACAT 002000 002001 CGTCTTCTGC TGTAGCTTCA ACTTACATCT GATCAAGAAA GAACACTGCC ATTAAAGTAA TTAATTTATA ACAACCATTA 002080 002081 TTGAGTGCTC CTCTTACGAG GACAATTTCT TCTCAGTATG AAAGAAGATA GAATACAAGA CTTTTGGTAG AGAAACAAAG 002160 002161 TGTTGAAAAA TCAATAGATT TGTCAAAAAG CTCAATCGGC ATTAGAACTC TCAACAACAA CAAAACAAAG AGTATTTTAC 002240 002241 AGGCTTCCAA GAAGCTGGCA GGAGGATAAA AACAGAATCT GGTCACATCA GGTTTGGTGT TAAACCTTAA CCCAGAGAAC 002320 002321 ATTACTGTAC ACAAAAGTCC TTTGTTATAT TTGGGATTCT ATTTTAATTA AAAATAGCTA AGCATAAAAA AACTTTCTAA 002400 002401 CCTTTTTGTT TCTGAGAAGC CTATAATATA AACATAAAAA TTATACACTT TTTGACATTT ATGTCCTATT TATTTTTCTA 002480 002481 GTTTCTTTAA GAAAGGGCTT GTTGTGCAGA AACAACCAGG ATAGCTTACA AATATGAATG TCTGGAAAGA CCCCCAGGGT 002560 002561 CTTCATTATT TACATTGTTT GATAACCACT TTCTAATTGT TTTTTTTTTT AATTTTTTAT TTTAATTTTT CCATAAGTTA 002640 002641 TTGGGGAACA GGTGGTATTT GGTTACATGA GTAAGTTCTG TAGTGGCGAT TTGTGAGATT CTGGTGCACC CATCATCCGA 002720 002721 GCAGTATACA ATGAACCCTA ATTGTAGTCT TTTATCCCTC GTCCCCCTTC TGTCCCTCCC CCAAGTCCCC AAAGTCCACT 002800 002801 GTATCCTTCT TACGCCCATA CTAATATTAA AAGTGGAGGT TGAGTCAAAT CTCAAACAAA ACTTAAAATT TTTTAGAGAC 002880 002881 TTAGCTTTTA GGGAAAATAA CTTACATGTA CATAAAATAC AGATTGTCAA AGATGAAAAA TCAATGTGAA TCTTGACATA 002960 002961 AATACATATT TAATCTATAT CCACATACAA TGAACAGGCT TCATAATAAT TCTAAAACTC TGGAACACTC TTTATCATGT 003040 003041 GAATAAACTG TTAGAGAAGG ATAACAGTCG ATCGGCATGT TTTAGAAAAA AATACATTTT AACACAGATT GAAAGACAGT 003120 003121 CTGTGGTAAA CCTTACATCA ACCAAAAAGA TAATACATTC AATTCTCATA AGACTCAGTT TAAGCTGAGA TTTTATTATA 003200 003201 AAATCAGTTT TGTCTCTGAA ACCACATGAT TATTTATGAG CTACGTGCAA CTTACTGCAT TCTTTTTGAG CTAGCAATAA 003280 003281 AAATAATCCA CATAATCATA GAGCCTATGT GGCATTGGAC TTTAACTGCT GGGATAGCAT GTCCCACGCT ATGTTCCCAG 003360 003361 GAACCAGGGA TGACAAGGAC AGGACATTAT TGCATCCACT GCCTCCAGCC CTGTGCCCCC TGCCCATGGC CGGCCAACCA 003440 003441 CTGAACTTGC TCTGGCTGAG CCTGACACCA CTTCAGAATC CTTCCCATCA GCATTGCTGG CAGCCTCTAC CAACTGGGAA 003520 003521 ACAGAATGGG AATCTATTTT GATCCCTTCT TGAAAGCTAG TCCTGAGGAT ATTAACAGGT ATAACACCAA AAAAAATTCA 003600 003601 TCATCAAACA CATTTCTTAA ATGCTGAATT AAACTTATAT ACATTGCTTT ACTGAAGAGT GTCTTAAAGC CTTTAATGAT 003680 003681 TATGCGTTAA TCATTAAATC CTCCCTTCTA AGTGGGGGAG TTAATCCTCC CCTCTAAGTG GGGAGGATAT TATGTCATAT 003760 003761 TCACCAAACT TCCTTGGCTA TAGAAATTGC CAATCCCTCC TGTCCCTCCC TGCCAGAGTA CAGTCCAGGG CTAAGCAACA 003840 003841 CATGCTTCAG AAAATGGTGG CTGCCAGCAA TGAGGCAAGG AAGGCTGCTG ATTGTACCCT GAAGAGATTA CCAGGCAACC 003920 003921 TCCCTGAAAG ATCATTCTGA TGTGAATCTT GTAAATGAAC CTATACACTT GATGGTGCCT GGGCTGTAAG GTGAGCTTGC 004000 004001 CACTCTGGGC CTGAGGACAG TTTCTAGGTG TAACAAAGTC TGGAGCAGGA GGAGGAAGAC CTGTAATTTA GGCCAGGGAT 004080 004081 CCCCAAACCC CAGGCCATGG ACCAGTAAGG GTCCGTGGCC TGTTAGGAAC TGGCCACACA GCAGGAGGTG AGTGGCAGAT 004160 004161 GAGCGCGTAT TTCCACCTCC TGTCAGATCA GCATCAGATT CTCAGAGAAG CGCAAACCCT ACTGTGAGCT GCGCATGTGG 004240 004241 GGAATCTAGG GTGCGCCTTT ATGAGAATTC TCCTTATGAG AATCTAATGC CTGATGATCT GACATGGAAC AGTTTCACCC 004320 004321 CAAAACCATC ACCAATCCCG CTGCCACCCA ATCCAAAGAA AAGTTGTTAT CCACAAAACT GGTCCCTGGT GCCAAAATGG 004400 004401 TTGGGGATCG CTGCTCTAGG CCACACTTTT GATGACCAAC TGACTCTATG TCCTGGGAAA AGTCACGTAA CTTCTCTGGA 004480 004481 TCTTACTTTC TTAATAAAAT TAGAGGGAAG ACCTGAATTA TAAATTAAGG CTTTTTCCAC ATGTAAGATA CTATGATCCT 004560 004561 ATGTTAAGAA ATTAACATTT AAAATGGTTG CCCCTTAATT CACGTATGGA CTAATTTTAA CCTAACAGAA CAAAGTCTAG 004640 004641 GACATGCTCT CATAAAAGAA TATACTTCAG GTCATTTAAA TTATAATTAA CTGTAGCCTC TACCTTTTTA TAAATAATTT 004720 004721 TAATATAGAT CCAAATCGTC GTCTCCTAGG AGATTCTGGC TACTTAGGAA GTAGCCAAAA CAACGGAAAA GGAAAGGTCC 004800 004801 CCATGTGAGC AGTGTACTCA CCTTTCACTT TCATTGTTGC CCAGAAATGT TCCAAACTGT GAGGCATAAG CATGCTCAAA 004880 004881 GAGCATGATG AGGAAATTCT CATTAAACTC AAAAGAACAG GGAAACTGAC GAAGGATCTG CCACACGCAG TCCAAGAAGA 004960 004961 GAAGAAATAC AGGAGCCTCC CACTTCTGCT TGGTGTTACA GTAGGCTGAC TGTGCACAGC GCTGCTGGAA TGGGTGACCA 005040 005041 GCCTAGGGGG AAGATGGAGG CGTGACAGTC ATATCCTGGT GAGATCACAT GACAGAGCAT TCTACCGACA CCACTATACA 005120 005121 CAATTACAGT GACACTCCTA GTACCTGGAA CATCATATAA TTAGGGTAGC TGTTGTACAG ATTAATGATT TCTTGGTATA 005200 005201 AAATAAATAG CGGCAGCAAC TAAGGAAAAA GACACACTTC CAAATCCTTA ATGAGGCTGC GCGGCTAAGG TGTGACCACA 005280 005281 GGAACTGCAC TGCCCTTGGA ATATCCCATG GAAGAATAAT GAACTTAAGC AATAATAAAC TTACAAAATA AACCTTTCTA 005360 005361 GGTCTACAAA ACCTGGAGCA AAGTCAAAGA ACATAAGCTC TCAGTACAAA GAAGAATCAT CACCTCTGTC TAACACTGTA 005440 005441 GATTGTGCTG TACACTAAAC AAGCCTCACC CTAAGTGGAG ACAGATATGG AACTCTGATC ACCTTTATAA TGTCAGCTCT 005520 005521 GATAGTAAAT CTCTAATTAT ATACGAAAAG TTATTGTGTT GAAAGATCTT TATGAGTACT TTTCTACAGG AGATAAAGCT 005600 005601 GTCATTAATT ACCCTCTTCT CCCAAAATGA ACAGCAAGAG TCTGCCATCT ACTGACCAAA GTAAATTTAA GACTCATTTG 005680 005681 ACTGTCTTGT TCAGAACCCA AATGCTGACC TTAATACAAA TCATACTCTG CTAGGAATTT CACAGATCTG CTTTGTCTCT 005760 005761 GGGTCCTTCT ACTACTGTAT GTGACAAAGG TAATGACATA GAAATTTTAC AGTGGTTCAC AGAATTGTGA TATCCATTAA 005840 005841 AATAACATAA |
Predicted Small Protein
Name | ENST00000498997.2_smProtein_4286:4522 |
Length | 79 |
Molecular weight | 8711.0073 |
Aromaticity | 0.0897435897436 |
Instability index | 41.9858974359 |
Isoelectric point | 6.69659423828 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0437924555572 |
Amino acid sequence | MPDDLTWNSFTPKPSPIPLPPNPKKSCYPQNWSLVPKWLGIAALGHTFDDQLTLCPGKSH VTSLDLTFLIKLEGRPEL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLHHHHHHHLLLLLLLLEEELLLLLE EEELLLEEEEEELLLLLL |
PRMN | - |
PiMo | - |