ENST00000500113.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000500113.1 |
Source |
Gencode19 |
Same with |
lnc-USP35-1:6 |
Classification |
intergenic |
Length |
1789 nt |
Genomic location |
chr11+:77850849..77854134 |
Exon number |
2 |
Exons |
77850849..77850944,77852442..77854134 |
Genome context |
|
Sequence |
000001 GTAGCCACTT TTAAGTTTTA TCAGCTAGTT CATGCTTGCG TTGAAAGAGT GGTCGTTTGC GCTGGGTCAT CACTGTGTAG 000080
000081 TATTGGGGAT ACTTAGTTCT GTAAACCAGA AATCTAAAAT CAGTCACTGG AGTAAAGTCA AGGTGTCATT TGGATTGGTT 000160 000161 GCTTCCAGAG GCTCTGCAGG GAGATTGTTT TTCTTGTCTT TTTCAGCTTT TAGAAGTTGC CTGCATTCCT TGGCCCCTTC 000240 000241 CTCACATCAT TCCAACCAAC TTCCATCCTT ACAATCGATT ACTTTCCTGT AATAGCTACA GTCAAATGGG CAGCTGAAGA 000320 000321 TGATGATGAT GATGATCTTG ACACCGAGAA GCAGAAGACC AATGAAGATG ACCAGACAGC AAAAAAGGAT AAGTTAAAAG 000400 000401 AAGGTAAAAG AAGGCCACTC GTACTTGCTG TCTCAGTATC TAAAGGTGGT CACCTTCCAG TAGAGAGGCC CACCCACTGC 000480 000481 AGACCGTGCC ACCGAAGGTG ACATGCACTT TCTGCCACCC ATCCAAAACC GTAACGTGAA TCTGCAACAG GAGAGGAAAG 000560 000561 AAGAACCAAA ACTTCCAAGG CCTTGCATTT TTTCTTAAAA GCATTTTTTT TTTTTTTTGG AGATGGAGTC TCACTCTATT 000640 000641 GCCTGGAGTG CAGTGGCGTA ATTTCGGCTC ACTGAAGCCT CTGCTTCCCG GGTTTAAGAA ATTCTCTGCC TCAGCCTCCC 000720 000721 AAGTAGCTGG GATTACAGGC ACATGCCACC ACACCTGTCT AATTTTTGTA TTTTTAGGAG AGACAGGGTT TCACCGTGTT 000800 000801 GGCCAGGCTG GTCTTGAACT CCTGACCTCG TGATCCACCT GCCTTGGCCT CCCAAAGTGC TGGGATTACA GGCCTGAGCC 000880 000881 ACTGCACCTA GCCAAAAGCA TTTTTTAAAG AAAAATTGGT CTATATTTTT TGTTTCTACT TTATATCTTT GTACATATTT 000960 000961 TTAGAGTGCA GGCATTTTTA ATAATCTTGG ATGACCAAAG CAGCTTTCAG AATGTTCTTT GCCCAACTTC TGACTTTACT 001040 001041 TGTAGTGTGA CCATGTTCAT TAGAATCTCA AAGGAGGAAG AAAAGAAAAA ACAAACTTGT AAAAAATGAA AAATAGATCT 001120 001121 GGCGAGGTGA TTCACGGCTG TAAGCCCAGC ACTTTGAGAG GCTAAGGCGG GTGGATCACC TGAGGTCAGG AGTTCGAGAC 001200 001201 CAGCCTGGCC AACATGGTGA AATCCTATCT CTACTAAATA TACAAAAATT AGCCAGGTGT GGTGGTGGGT GCCTGTAGTC 001280 001281 CCAGCTACTC AGGAGGCTGA GGCAGGAGAA TCTGGAACCC CGGAGGCAGA GGTTGCAGTG AGCCGAGATC GCACCATTGC 001360 001361 ACTCCAGCCT GGGCGACAGA GTGAGACTAT CTGAAAAAAA GCAAAAATAG GCCAGGCATG GTGGCTCATG CCTTGATCCC 001440 001441 AGCACTTTGG TAAGCCTAGG CAGGTGGATC ACTTGAGGTC AGGGGTTCGA GACCAGCTTA GCCAACATGG TGAAAACCTG 001520 001521 TCTCTACTGA AAATACAAAA ATTAGCCAGG CGTGGTGGTG GGTACCTGTA ATCCCAGCTA CGCGGGAGGC TGAGGCATGA 001600 001601 GAATTGCTTG AACTCAGGAG GCGGAGGTTG CAGTGAGCAG CAGTCATGCC ATTGCACTCC AGCCTGGTGA CAGAGTAAGA 001680 001681 CTCTGTCTCA AAAATAAATA AATGCAAAAA CAACAAATCT TATTTTTTCA GCCTGTTCGA TGTATGTGTG AAACAATGTT 001760 001761 GTCCAACAAT AAACGGGAAT CTTATTTTT |
Predicted Small Protein
Name | ENST00000500113.1_smProtein_1052:1108 |
Length | 19 |
Molecular weight | 2254.7151 |
Aromaticity | 0.0555555555556 |
Instability index | 58.8 |
Isoelectric point | 9.74639892578 |
Runs | 5 |
Runs residual | 0.0116959064327 |
Runs probability | 0.0371489136194 |
Amino acid sequence | MFIRISKEEEKKKQTCKK |
Secondary structure | LEEEELHHHHHHHHHLLL |
PRMN | - |
PiMo | - |