ENST00000500113.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000500113.1

Source

Gencode19

Same with

lnc-USP35-1:6

Classification

intergenic

Length

1789 nt

Genomic location

chr11+:77850849..77854134

Exon number

2

Exons

77850849..77850944,77852442..77854134

Genome context

Sequence
000001 GTAGCCACTT TTAAGTTTTA TCAGCTAGTT CATGCTTGCG TTGAAAGAGT GGTCGTTTGC GCTGGGTCAT CACTGTGTAG 000080
000081 TATTGGGGAT ACTTAGTTCT GTAAACCAGA AATCTAAAAT CAGTCACTGG AGTAAAGTCA AGGTGTCATT TGGATTGGTT 000160
000161 GCTTCCAGAG GCTCTGCAGG GAGATTGTTT TTCTTGTCTT TTTCAGCTTT TAGAAGTTGC CTGCATTCCT TGGCCCCTTC 000240
000241 CTCACATCAT TCCAACCAAC TTCCATCCTT ACAATCGATT ACTTTCCTGT AATAGCTACA GTCAAATGGG CAGCTGAAGA 000320
000321 TGATGATGAT GATGATCTTG ACACCGAGAA GCAGAAGACC AATGAAGATG ACCAGACAGC AAAAAAGGAT AAGTTAAAAG 000400
000401 AAGGTAAAAG AAGGCCACTC GTACTTGCTG TCTCAGTATC TAAAGGTGGT CACCTTCCAG TAGAGAGGCC CACCCACTGC 000480
000481 AGACCGTGCC ACCGAAGGTG ACATGCACTT TCTGCCACCC ATCCAAAACC GTAACGTGAA TCTGCAACAG GAGAGGAAAG 000560
000561 AAGAACCAAA ACTTCCAAGG CCTTGCATTT TTTCTTAAAA GCATTTTTTT TTTTTTTTGG AGATGGAGTC TCACTCTATT 000640
000641 GCCTGGAGTG CAGTGGCGTA ATTTCGGCTC ACTGAAGCCT CTGCTTCCCG GGTTTAAGAA ATTCTCTGCC TCAGCCTCCC 000720
000721 AAGTAGCTGG GATTACAGGC ACATGCCACC ACACCTGTCT AATTTTTGTA TTTTTAGGAG AGACAGGGTT TCACCGTGTT 000800
000801 GGCCAGGCTG GTCTTGAACT CCTGACCTCG TGATCCACCT GCCTTGGCCT CCCAAAGTGC TGGGATTACA GGCCTGAGCC 000880
000881 ACTGCACCTA GCCAAAAGCA TTTTTTAAAG AAAAATTGGT CTATATTTTT TGTTTCTACT TTATATCTTT GTACATATTT 000960
000961 TTAGAGTGCA GGCATTTTTA ATAATCTTGG ATGACCAAAG CAGCTTTCAG AATGTTCTTT GCCCAACTTC TGACTTTACT 001040
001041 TGTAGTGTGA CCATGTTCAT TAGAATCTCA AAGGAGGAAG AAAAGAAAAA ACAAACTTGT AAAAAATGAA AAATAGATCT 001120
001121 GGCGAGGTGA TTCACGGCTG TAAGCCCAGC ACTTTGAGAG GCTAAGGCGG GTGGATCACC TGAGGTCAGG AGTTCGAGAC 001200
001201 CAGCCTGGCC AACATGGTGA AATCCTATCT CTACTAAATA TACAAAAATT AGCCAGGTGT GGTGGTGGGT GCCTGTAGTC 001280
001281 CCAGCTACTC AGGAGGCTGA GGCAGGAGAA TCTGGAACCC CGGAGGCAGA GGTTGCAGTG AGCCGAGATC GCACCATTGC 001360
001361 ACTCCAGCCT GGGCGACAGA GTGAGACTAT CTGAAAAAAA GCAAAAATAG GCCAGGCATG GTGGCTCATG CCTTGATCCC 001440
001441 AGCACTTTGG TAAGCCTAGG CAGGTGGATC ACTTGAGGTC AGGGGTTCGA GACCAGCTTA GCCAACATGG TGAAAACCTG 001520
001521 TCTCTACTGA AAATACAAAA ATTAGCCAGG CGTGGTGGTG GGTACCTGTA ATCCCAGCTA CGCGGGAGGC TGAGGCATGA 001600
001601 GAATTGCTTG AACTCAGGAG GCGGAGGTTG CAGTGAGCAG CAGTCATGCC ATTGCACTCC AGCCTGGTGA CAGAGTAAGA 001680
001681 CTCTGTCTCA AAAATAAATA AATGCAAAAA CAACAAATCT TATTTTTTCA GCCTGTTCGA TGTATGTGTG AAACAATGTT 001760
001761 GTCCAACAAT AAACGGGAAT CTTATTTTT
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Predicted Small Protein

Name ENST00000500113.1_smProtein_1052:1108
Length 19
Molecular weight 2254.7151
Aromaticity 0.0555555555556
Instability index 58.8
Isoelectric point 9.74639892578
Runs 5
Runs residual 0.0116959064327
Runs probability 0.0371489136194
Amino acid sequence MFIRISKEEEKKKQTCKK
Secondary structure LEEEELHHHHHHHHHLLL
PRMN -
PiMo -