ENST00000502479.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000502479.1 |
Source |
Gencode19 |
Same with |
lnc-DHX37-3:6,NONHSAT031731 |
Classification |
intergenic |
Length |
4972 nt |
Genomic location |
chr12-:126443248..126464994 |
Exon number |
6 |
Exons |
126443248..126443498,126446288..126446527,126447557..126451454,126451740..126451888,126454357..126454542,126464747..126464994 |
Genome context |
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Sequence |
000001 CCAACATTAT TTTTGTGCAG ATTTCAATTC ATGCTGCACT CATCCTGGGG GCAAAAGTTA AAGGTTTTCT AAAAAGCTAC 000080
000081 TTAGTGAATG TCTTAGTTAA TGGAAAAGAA AATAAGTCAA TCCTTTTTTT TCTAACCTTG AAGTTGCAAA GATTGACAAT 000160 000161 GAACTCTGTA ATGGTGCATT CTCCTCTTGT GTGGTTTTTG AAAGCTGAGT TATCCTTCCT GTAATGATTC TGCACCTGCA 000240 000241 AACTATACGT GGCTTCCTCC AGGCAGTAAA TCTACAGCCC AGGCTCCCTG CATCTTATGG CTCCAATCAC TTTGGATCTC 000320 000321 ATCGTCGCCT GCACATTGCC ATACACAGGG AAGGAGAAGA GATGGAGAAG GCAAAGACTT TCTGAAAGCC GTGGCTAAAA 000400 000401 GCTGGCATGT GTCACATCAG CTCACATTCC ATTGTAGAGA CGGGGTTTCA CCGTGTTAGC CAGGATGGTC TTGATATCCT 000480 000481 GACCTCGTGA TCCGCCCGCC TTGGCTTCCC AAAGTGCTGG GATTACAGGC GTGAGCCACC GCTCCCGGCC TGGCAGGCAT 000560 000561 TCTTGAGGCA AACGGGAAAT GGGTGAACGG GAGGAACATT GGCAGCACTT GTGGTCTGCA CCAAGAACTG AATCGAATTT 000640 000641 CCATGTGTTA TTGAATGTTC ACAAAGACCT TGTACAGCGA GTGTTACTAC CTCTGGTCAA TGATTCAACT CAAGGCTCAG 000720 000721 AAAAGTCAAG TGTCTTGTCC AGGGACACTT AGTCAGAAGT GAATCCAAGG TTTAAGCTCA AGTCTGCCTA ACTCTGAATT 000800 000801 TCACAGCCTT TTGCTACATA TGGCGAATAA TATATCCCTG AGCACTAAAG GCAGACTCCA AGGATCTTGT CTCTGCAATC 000880 000881 ATCATTCTGG CCATAATTTA TGAAAAGCAA CCCAAAGTAT GTGATGTAAT AAAAAGTACT ATCTATGAGT TTACCCTTCC 000960 000961 AAAAATTGAA CTGAATTCTG AGCTCTAAAT TTGGAATCAA AAGAACTTTT CTCTGCACTA ATCATTTGGA ACATCACTTA 001040 001041 AAGAAAACAA CGAAAAACTG GTGTCCCCTG AGAGAAAGCA ATACAAAACA TTATGCATAA AGAAATCCTT CCAAAAAATA 001120 001121 AACCAAATCC AGTCAAATCT CTAGTTTTGA CTCCTAGCTT ACCGGAAATA CGTGATGGGA AAAAAATGAA ATGACACCAC 001200 001201 TATGATTCAA TCAGCCAAAT CCAGCATATG CAAATTTCTA CCAGATAAAT GGTTTAGTTT CTTCCCCAAA CAAATGGCAC 001280 001281 AAGGAAACGG AGGTAAGAAT GGGATGCTGT TATAGATTTT AAAAGATTTA AGAAAGTATA AACTAAATAC ACTATGTGCA 001360 001361 TCCTCTCTGA ACGTGCTTCA AACATATCAA GGGGTCAATG AGCAGTTTTG AAACAATAAG GGAATTTGAA CACTGAATGG 001440 001441 TTGTCAGAAG ATAGTAAGAG ATCATTATTA ATTTTACTAG ACATAATGAT GTTCTGATTT TGTTTTTTTT TTAAAAAAAA 001520 001521 AACAGTGTTA TTTCCTTTAT AGATACATCA TATAGTATTA ACTAATGAAA TGCTTTGATA TCTGGAACGT TTAAAAAATA 001600 001601 TTCCCGATGG AGTAAGTGCA AAGAAACAGG TAAGCAAAAT GCTGATAATT GCTGAAACAC AGGATGTGTA CCTGGGGCTT 001680 001681 CATTTACTAT CTCTTCATTT TCTATTTTGA TATTTGTTGG ACATTCTCAT AAAAAGGAAA GTTATGTTTT ATTTTCTCAT 001760 001761 AAGCTAGTAA TGAAATAGCC CTACGTAACT GATATTGTAG AGACAAGAAT AGGTGTAATA GAGCTTAAGG TTTTCATTTA 001840 001841 AAAAACTATC TGTAGACTTC AATGGATCTT AGGTGGCATC CATGCAATAA CACTCGTGGA ACATGCAGGA CAGGTGTGGA 001920 001921 GCTCCATCTT CACACAGTGA CATTTTTTAT GCTTCTGTTT TCCCTAAGAG TGGAGTGAGA GGATGATTAT TTTATATCAT 002000 002001 GGACTTCTTC CCTGCTATAC TTTTTTTAAT TATTTTACTT TCACTTCTGG GATACATGTG CTGAGCATGC AGGCTTGTTT 002080 002081 ACATAGGTAT ACATCTGCCA TGGTGGTTTG CTGCACCTAT CAACCCATCA TACAGGTTTT AAGCCCTGCA TGCATTAGGT 002160 002161 ATTCGCCCTA ATGCTCTCCC TCGCCTTTCC CCCCACCCCC TGATAGCCCC CAGTGAGTCA TATTCCCCTC CCTGTGTCCA 002240 002241 TGTGTTCTCA TTGTTCAACT CCCATTTATG AGTGAGAATA TGTGGTGTTT AGTTTTCTGT TCCTGTGTTA GTTTGCTGAG 002320 002321 AATGATGTTT TCCAGCTTCA TCCATGTCCC TGAAAAGGAC ATGAGCTCAT TCTTTTTTAT GGCTGCATAG TATTCCACGG 002400 002401 TGTTATATGT GCCACATTTT CTTAATCCAG TCTGTCATTG ATGGACATTT GGGTTGTTTC CAAGTCTTTG CTATTGTAAA 002480 002481 TAGTGCTGCA ATAAACATAT GTGTGCATGT GTCTTTGTAG TAGAATGATT TATAATCCTT TGGGTATATG CCCAGTAATG 002560 002561 GGACTGATGG GTCAAATGGT ATTTCTGGTT CTAGATCCTT GAGGAATTGC CACACTGTCT TCCACAATGG TTGAACTAAT 002640 002641 TTATACTCCC ACCAACAGGG TAAAAGCATT CCTATTTCTC CACATCCTCT CCAGCATCTG TTGTTTCCAA ATGTTTTAAT 002720 002721 GATTGCCATT CCACCTGGCG TGAGATGGTA TCTCATTGTG GTTTTGATTT TCATTTCTCT AATGACCAGT GATGATAAGC 002800 002801 TTTTTTTCAT ATGTTTGTTG GCCACATAAA TGTCTTCTTT TGACTTTTAT GTGGAAACAA ATTTAACTGC ACAGAGAGGT 002880 002881 GAAAATTAAT TAATAACTTT TAAAGTAATT CCCTAAGTTT CTAAGGATCT ATATGTTTCC ATCTGACTTT ATTTTATTTA 002960 002961 AGCTCTTGAT TGATGCTGCA TTTGGAGCAG GTTCATGAAC ATGAATAGAG TTAATCTGGG ACAGATTTCC CTCATTTGAT 003040 003041 TTTTTCACTG TTTCCATCAC AGAACTTATT TCATGCTCAC CATGTTTGCA GGCATTGAGC TTGGTACTGG AGCCACAGAG 003120 003121 CTGGATCAGA CAGACTTGTG CAAATATTTC AGGTTTTTTT TGTGGGGGGG TCATATTTAT AGATAAATAA CAGTAAAGAG 003200 003201 TGACGGGTTC TTATGAAAAT GCATACACAG TGAAGTAGAG GGTGAAAAGG AGGGATGTGT TCTATGAGGA GGAAGAGTGA 003280 003281 TAAGAAAGTG TAAGGGGATG TGTCTGTGTC TAGACATATG TGTGTTCACG TGTGTGCGTG CTTGTGTGTA CTGCATGTGT 003360 003361 ATATGTGTGG CCATGCACCT GTGTGCATGT TCATGTGTGT GTGTGTATGT GTCTGTGTTG AGGACTAAAT TAATTGGGCT 003440 003441 TATGGAAGCA GGGAGCCACT GATAGGTTTA ATTAGAGACT GACATGATAT GATAGTTTAG GTGGATTTCT CTGGGGGCTG 003520 003521 TGTTGAGGGA CAGTGGGGAG GAGAGCTAGA AGGAAGAAAA GGACACATGC ATAACAGAAG CAATATCTGT CTATGGGATG 003600 003601 GTGGAAAGAA TCAGAAAAGA CTTAATAAAA CATGTGACAC TTTAACTGAA TCTTGAAATA GACAAGTGTT GGAGGAGGGA 003680 003681 GTTGGACCAG ATACTTCATG CAAAGGGAAG AAAAGTGCAC AAACAAAATA TGAGAAACAA GGCAGACAGG CATTTTTTTA 003760 003761 AAATTTTCGC ACCCACTGAT AGACCAGTGA TGCATTCACA TCGTCTGCAT TCATGATCAA CAAAAGTGCT TTCCTAGAAC 003840 003841 ATGAACCTCA ACCCAAGTGT CGCCTCAAGT AGTGTATGCA TGAACTCAAG CATTAAATTA GAATTGATTT TTTAAAAAAC 003920 003921 TCACACAAAC AGATGTATTA TTTAAAAATC TTTAAAGCAG GTTTAAACAG TTTTCAGGAT TAAAAGCAGC CACTATTAGA 004000 004001 AAGAACAAAA ATACATTTGA CATAAATATA AGGAGCCTCA ATAGAACCTC CTGTACCCAG TCATTGTCAA TGCCACATCC 004080 004081 ATTCATTCAC CAGCCCTTAT ATCAATGCTT GCTGGGCTCA CTTACCACGA TCAGCACGTG CATGTCCTTA TCTGAAAGCT 004160 004161 TGCCACTCAA ATGTGCTCAG TCTTACCTGT GTGGCTGGGA GTGTTGGGGA TTTAATGTCA AGGGAAAGAA TCTTCCATCA 004240 004241 ATGAATGATG AAAGTTAGTT TTCACAACTT CCGGTCCCCT TGGCCCTCAT CAAAGGGCTC CAGGTGAGGT TTGGGCTCCT 004320 004321 TGCTATCCTC CGAGTTTCCA CGGTAGTTTT AAGCACCATT GCCCGTGGTA ATGGCTGACA TTGATACTGC ACTTTTTTTT 004400 004401 TATTTAAGAT GGAGTTCCCC TCTGCCACCC AGACTGGAGT ACAGTGGCGC GATCCTGGCC ATCGCAACCT CCGCCTCCCA 004480 004481 GATCCCTCCT ACAACACATG AGAATTGTGG GTGCTACAAT TCAAGATGAG ATTTGAGTGG GGACAAAGTC AAACCATATC 004560 004561 ATTAGATAGG ACACTGGAGA AAGGCAAGAA AGAAAAGACA TCTGAAGAAT GAAGGGAGCC AAAGAAATGC CAACATTTTG 004640 004641 CTTTTTGAAG AAAAGCTAAA TTAAAGTCAA AATGGATTTA TCAATTTCCT TGGGTTCGTG AATGTACAGA ACTTTATTAA 004720 004721 GACTGTCATG CTGTCATCAT GGCTGGATCT GATACGGCCA CCGTGGACCT TGAGGTGACC TCGGGAATGG AGACAGTGCA 004800 004801 TGGGAGAGAA TCACATTGGA AGGGGCCTGG GTTTCTGAAG ACCCTGTAAG ACAGATCTCC TTGCAGCCCT GACTGCCCAC 004880 004881 ATTAGGGCTT TTATGTTAGG GTGAAGTTAC CTTGCATTGT CATATAAGCA ATTGCTATTT GTGGTGTCTT GCAAATAAAC 004960 004961 CTATTCTGAT CT |
Predicted Small Protein
Name | ENST00000502479.1_smProtein_1982:2170 |
Length | 63 |
Molecular weight | 7128.45 |
Aromaticity | 0.161290322581 |
Instability index | 55.0774193548 |
Isoelectric point | 8.35418701172 |
Runs | 13 |
Runs residual | 0.0560368663594 |
Runs probability | 0.0466824290354 |
Amino acid sequence | MIILYHGLLPCYTFFNYFTFTSGIHVLSMQACLHRYTSAMVVCCTYQPIIQVLSPACIRY SP |
Secondary structure | LEEEELLLLLLLEEEEEEEELLHHHHHHHHHHHHHHLLEEEEEEELLEEEEELLLLEEEE LL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLLL LL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooo oo |