ENST00000503474.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000503474.1

Source

Gencode19

Same with

lnc-SAP30-5:27,NONHSAT099281

Classification

intergenic

Length

1579 nt

Genomic location

chr4+:174451614..174506879

Exon number

5

Exons

174451614..174451690,174452118..174452229,174457999..174458121,174503856..174504029,174505787..174506879

Genome context

Sequence
000001 ATGCAAGTGT TTAACAGATG CTTCACTATT AAAATATTTT CCCCCCAAGT CTCAAATATT GAAGAATCTC TAACCAGGGA 000080
000081 CACCAGTCCC TACGAAGACC TTGGGCGATT TTGAAGTGCG GGCACCTCGA TTCCCCGAAT CTGTAGTGTG GCTGGTATCG 000160
000161 GTGTTCCCCT GGTTTAACTA GCCTGTTTGA AGGCACAGAT CATTCATGGG GATGTATAAC CGAAACCAGT CCTCTCCACC 000240
000241 GCCTGGGGAT CTTCACTTTC GCAGTCTACG ACTGCCTGTG ACTCCAGAAA GACAAACTGC AGATTGGCCA AGATGGGGAA 000320
000321 ATTGAGGCAG AGAAGCCAAG ACATGTGCTA AAGGTCATGC AGGCTATGAA TGGAGCTGGA ATGTGAACGC AGGCCATATG 000400
000401 ACCCCAGAGC CCATGTTCTT GAACCCTTAG AAAGACAGCA GCAACACACC TGGTGCAGCA GCTGCTTAGT TGGAGTGGCT 000480
000481 GACAAGGAGA GAATGATTTC CAGGAAGAGC GGAACACATA TGGAAGGCCT TAGCTTATCT TTAGCGCCTC ATACACCCGT 000560
000561 TCTGGACTTC AGAAAGGCCA GTGAGTGGGA TTAGGCCTCA GAGATAGGAT GTCAGTCCCA GTGAGGGATG GCCTAGAGCA 000640
000641 TTCTTTAATT CTTTCCTTTG GGTCACACAT AAGAAACAAT TTTCCAGCAC TGATGAGTGT TATTAACAAT GAGATGGGAT 000720
000721 AGAATTTAGT TTTCCCTATG GCTGTGCTTC AAAAATAGAA AAGCTGTCTT TTCTCTGGAA TGATTGAATG AAGCTCTGGG 000800
000801 GAGGAAAAGG TGGATTGGCA GATCTCTTAA AGGAAGCTTC TCCTTCTAGG CACTATTCTA AGGCTTAATA TTTTAACTCC 000880
000881 CTATATTAAC CTAGTTCAAC TAAACAGTGA TCTGAGTAAT TTTATTTTTA TTAAAGCTCA GATCAAAATG CCATTAACAT 000960
000961 TGATTGAGAA AATCAAAGGA ATCTTTGATG TGAGTGGTTA AATTGCTGAA TTATTTCAGT CCCATACCCT CACAGCATGA 001040
001041 GTACCTGATC TGATAGACTT CTTTGGAATT CCTTTTTTGT TTGAGACAGA GTCTTGCTCT GTCGCCCAGG CTGGAGTGCA 001120
001121 GCGGTGTGAT CTCAACCATT GCAACCTCCA CCTCCCAGGT TCAAGTGATT CTCATGCCTC AGCCTCCTGA GTAGCTGGGA 001200
001201 TTACAGATGT GCACCACCAT GCCCGGCTAA TTATTTTGTA TCTTTAGTAG AGATGAAGTT TTGCCATGTG GGCCAGGCTG 001280
001281 TTCTCAAACT ACTGGCCTCA AGTGATCTGC CCGCCTCGGC CTCCCAGACT GCTGGGATTA CAGGCGTGAG GCACCGTGCC 001360
001361 TGGCTGGGAT TCCATAATAA ATCCCTCTGT GTCTATTTCT TTTTTCAAAT ATAATTTTCT TCATTTCCAA ACATCATCTT 001440
001441 TAAGACTCCA AGGATTTTTC CAGGCACAGT GGCTCATACC TGTAATCCCA TTGCTTGGAG AGGCCAAGGT GGAAGTTCAT 001520
001521 TTGAGGCCAG GAGTTCGAGA CCAGGTGGGC AACATAGTGA AACCTTGTCT CTACAACAT
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Predicted Small Protein

Name ENST00000503474.1_smProtein_608:721
Length 38
Molecular weight 4083.6716
Aromaticity 0.0540540540541
Instability index 68.6189189189
Isoelectric point 5.97027587891
Runs 7
Runs residual 0.009422266303
Runs probability 0.0458021046257
Amino acid sequence MSVPVRDGLEHSLILSFGSHIRNNFPALMSVINNEMG
Secondary structure LLLLLLLLLLLEEEEELLLHHHLLLHHHHHHHHLLLL
PRMN -
PiMo -