ENST00000503474.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000503474.1 |
Source |
Gencode19 |
Same with |
lnc-SAP30-5:27,NONHSAT099281 |
Classification |
intergenic |
Length |
1579 nt |
Genomic location |
chr4+:174451614..174506879 |
Exon number |
5 |
Exons |
174451614..174451690,174452118..174452229,174457999..174458121,174503856..174504029,174505787..174506879 |
Genome context |
|
Sequence |
000001 ATGCAAGTGT TTAACAGATG CTTCACTATT AAAATATTTT CCCCCCAAGT CTCAAATATT GAAGAATCTC TAACCAGGGA 000080
000081 CACCAGTCCC TACGAAGACC TTGGGCGATT TTGAAGTGCG GGCACCTCGA TTCCCCGAAT CTGTAGTGTG GCTGGTATCG 000160 000161 GTGTTCCCCT GGTTTAACTA GCCTGTTTGA AGGCACAGAT CATTCATGGG GATGTATAAC CGAAACCAGT CCTCTCCACC 000240 000241 GCCTGGGGAT CTTCACTTTC GCAGTCTACG ACTGCCTGTG ACTCCAGAAA GACAAACTGC AGATTGGCCA AGATGGGGAA 000320 000321 ATTGAGGCAG AGAAGCCAAG ACATGTGCTA AAGGTCATGC AGGCTATGAA TGGAGCTGGA ATGTGAACGC AGGCCATATG 000400 000401 ACCCCAGAGC CCATGTTCTT GAACCCTTAG AAAGACAGCA GCAACACACC TGGTGCAGCA GCTGCTTAGT TGGAGTGGCT 000480 000481 GACAAGGAGA GAATGATTTC CAGGAAGAGC GGAACACATA TGGAAGGCCT TAGCTTATCT TTAGCGCCTC ATACACCCGT 000560 000561 TCTGGACTTC AGAAAGGCCA GTGAGTGGGA TTAGGCCTCA GAGATAGGAT GTCAGTCCCA GTGAGGGATG GCCTAGAGCA 000640 000641 TTCTTTAATT CTTTCCTTTG GGTCACACAT AAGAAACAAT TTTCCAGCAC TGATGAGTGT TATTAACAAT GAGATGGGAT 000720 000721 AGAATTTAGT TTTCCCTATG GCTGTGCTTC AAAAATAGAA AAGCTGTCTT TTCTCTGGAA TGATTGAATG AAGCTCTGGG 000800 000801 GAGGAAAAGG TGGATTGGCA GATCTCTTAA AGGAAGCTTC TCCTTCTAGG CACTATTCTA AGGCTTAATA TTTTAACTCC 000880 000881 CTATATTAAC CTAGTTCAAC TAAACAGTGA TCTGAGTAAT TTTATTTTTA TTAAAGCTCA GATCAAAATG CCATTAACAT 000960 000961 TGATTGAGAA AATCAAAGGA ATCTTTGATG TGAGTGGTTA AATTGCTGAA TTATTTCAGT CCCATACCCT CACAGCATGA 001040 001041 GTACCTGATC TGATAGACTT CTTTGGAATT CCTTTTTTGT TTGAGACAGA GTCTTGCTCT GTCGCCCAGG CTGGAGTGCA 001120 001121 GCGGTGTGAT CTCAACCATT GCAACCTCCA CCTCCCAGGT TCAAGTGATT CTCATGCCTC AGCCTCCTGA GTAGCTGGGA 001200 001201 TTACAGATGT GCACCACCAT GCCCGGCTAA TTATTTTGTA TCTTTAGTAG AGATGAAGTT TTGCCATGTG GGCCAGGCTG 001280 001281 TTCTCAAACT ACTGGCCTCA AGTGATCTGC CCGCCTCGGC CTCCCAGACT GCTGGGATTA CAGGCGTGAG GCACCGTGCC 001360 001361 TGGCTGGGAT TCCATAATAA ATCCCTCTGT GTCTATTTCT TTTTTCAAAT ATAATTTTCT TCATTTCCAA ACATCATCTT 001440 001441 TAAGACTCCA AGGATTTTTC CAGGCACAGT GGCTCATACC TGTAATCCCA TTGCTTGGAG AGGCCAAGGT GGAAGTTCAT 001520 001521 TTGAGGCCAG GAGTTCGAGA CCAGGTGGGC AACATAGTGA AACCTTGTCT CTACAACAT |
Predicted Small Protein
Name | ENST00000503474.1_smProtein_608:721 |
Length | 38 |
Molecular weight | 4083.6716 |
Aromaticity | 0.0540540540541 |
Instability index | 68.6189189189 |
Isoelectric point | 5.97027587891 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0458021046257 |
Amino acid sequence | MSVPVRDGLEHSLILSFGSHIRNNFPALMSVINNEMG |
Secondary structure | LLLLLLLLLLLEEEEELLLHHHLLLHHHHHHHHLLLL |
PRMN | - |
PiMo | - |