ENST00000508287.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000508287.1 |
Source |
Gencode19 |
Same with |
lnc-MTNR1A-1:3,NONHSAT099661 |
Classification |
intergenic |
Length |
669 nt |
Genomic location |
chr4-:187348128..187422151 |
Exon number |
5 |
Exons |
187348128..187348252,187349859..187350004,187352772..187352922,187353299..187353392,187421999..187422151 |
Genome context |
|
Sequence |
000001 GTTACCTTCT CAACATGGCG AGCTTGCTGG ACGTCACGTC GCCTTCGCCT TTTCCGCTGC GGACTCTGCT CACCGACCTC 000080
000081 CTCAGTAGAG CCGGCCCTGC TCACTACCGC GCCCACGTGT CCTGTTGTGC TTCATTCCCA CAGGCCGCAT AAGAAGTGGG 000160 000161 TGCCGAGGCT CCCTTCCCAC TGCCATTCCA CTGGCCCAGA GGAAGCTTCT GTTGTGTTCA GATGGGCAGG CACTCTTCCT 000240 000241 CGAGAAGTTA AGTAGCCGGA ATATCTAAAT GCCTCTCCTT GGCGATTACT CGATGAGCGC CTGTCCTTCC TCCACTCTTC 000320 000321 CAGCAGACCT GCCTTTTGGG GCTGATGGAA ATATGCATAT TAGATTATCT GCAGAAACTG GCTCAGCACT ACAAGGAGCT 000400 000401 TGGCCCAGAG AGCTACCTTA GACCCTCCAA TGAATCTATT CAAACAGCTG CCTCTGTTAC CTTGACTCGT CTCAGATTTT 000480 000481 GTCGACCCGA GACGGGTCCT GGCACTAGGA ATGTAAAACT GTCTATTATT TCAGCTTGCT CCAGGCTGCC AACATGAAGA 000560 000561 CACTGGATGC GGAATCAGGA GGAGATGTAT ACAGCTCAGT CTCCAAAGCC AGGACAAGCC AGCTCCAACA CACTACTGGC 000640 000641 TGAATCTCAC CAATCGTTAT AGTTTTGTT |
Predicted Small Protein
Name | ENST00000508287.1_smProtein_344:556 |
Length | 71 |
Molecular weight | 7867.0284 |
Aromaticity | 0.0571428571429 |
Instability index | 57.5871428571 |
Isoelectric point | 8.98602294922 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0437745437745 |
Amino acid sequence | MEICILDYLQKLAQHYKELGPESYLRPSNESIQTAASVTLTRLRFCRPETGPGTRNVKLS IISACSRLPT |
Secondary structure | LEEEHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLEELEEELLLLLLLEEEEEEE EEEHHHLLLL |
PRMN | - |
PiMo | - |