ENST00000508287.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000508287.1

Source

Gencode19

Same with

lnc-MTNR1A-1:3,NONHSAT099661

Classification

intergenic

Length

669 nt

Genomic location

chr4-:187348128..187422151

Exon number

5

Exons

187348128..187348252,187349859..187350004,187352772..187352922,187353299..187353392,187421999..187422151

Genome context

Sequence
000001 GTTACCTTCT CAACATGGCG AGCTTGCTGG ACGTCACGTC GCCTTCGCCT TTTCCGCTGC GGACTCTGCT CACCGACCTC 000080
000081 CTCAGTAGAG CCGGCCCTGC TCACTACCGC GCCCACGTGT CCTGTTGTGC TTCATTCCCA CAGGCCGCAT AAGAAGTGGG 000160
000161 TGCCGAGGCT CCCTTCCCAC TGCCATTCCA CTGGCCCAGA GGAAGCTTCT GTTGTGTTCA GATGGGCAGG CACTCTTCCT 000240
000241 CGAGAAGTTA AGTAGCCGGA ATATCTAAAT GCCTCTCCTT GGCGATTACT CGATGAGCGC CTGTCCTTCC TCCACTCTTC 000320
000321 CAGCAGACCT GCCTTTTGGG GCTGATGGAA ATATGCATAT TAGATTATCT GCAGAAACTG GCTCAGCACT ACAAGGAGCT 000400
000401 TGGCCCAGAG AGCTACCTTA GACCCTCCAA TGAATCTATT CAAACAGCTG CCTCTGTTAC CTTGACTCGT CTCAGATTTT 000480
000481 GTCGACCCGA GACGGGTCCT GGCACTAGGA ATGTAAAACT GTCTATTATT TCAGCTTGCT CCAGGCTGCC AACATGAAGA 000560
000561 CACTGGATGC GGAATCAGGA GGAGATGTAT ACAGCTCAGT CTCCAAAGCC AGGACAAGCC AGCTCCAACA CACTACTGGC 000640
000641 TGAATCTCAC CAATCGTTAT AGTTTTGTT
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Predicted Small Protein

Name ENST00000508287.1_smProtein_344:556
Length 71
Molecular weight 7867.0284
Aromaticity 0.0571428571429
Instability index 57.5871428571
Isoelectric point 8.98602294922
Runs 13
Runs residual 0.0408769448373
Runs probability 0.0437745437745
Amino acid sequence MEICILDYLQKLAQHYKELGPESYLRPSNESIQTAASVTLTRLRFCRPETGPGTRNVKLS
IISACSRLPT
Secondary structure LEEEHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLEELEEELLLLLLLEEEEEEE
EEEHHHLLLL
PRMN -
PiMo -