ENST00000514269.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000514269.1 |
Source |
Gencode19 |
Same with |
lnc-FAM160A1-2:1,NONHSAT098768 |
Classification |
intronic(AS) |
Length |
2565 nt |
Genomic location |
chr4+:152595635..152599045 |
Exon number |
3 |
Exons |
152595635..152597712,152598452..152598583,152598691..152599045 |
Genome context |
|
Sequence |
000001 AAAATATAAG GAAATACAGG AGAGATCAAA AGAGATCACC GGAATTCCCA TTTTCTCAAG AAAACCAATG TTAATATTTT 000080
000081 GGTGTTTTTT CTTCCCATCT TTTTCTTTCT GTTTTGTAAC ATACTTGGGA TCATAACGTA TATTCAGTTT GTGTCCTGCT 000160 000161 TTCTTTCATT TAGCACAGAA GTACTTTCTT AATAAAAAGA TCTAGCTAGT ATCCATCAGA TGTATTTATC ATAATTTATC 000240 000241 CCCTCCTCGT AGATATCTAG ACTTTGACCA GTGTTGATTT TGTTCATCTG CACAGACTCC CAAAAAAGCT CCTAGCTGAA 000320 000321 AACCTGGCTC AAAACAGAAA CCACCTGTAA GGACTTGCTC GTGAAAAATC TACGCAGCAG TTCCCTCCAG GAAAACCAGG 000400 000401 CGGACGAGCA GCCTGTGCCT GGAAGTAGGC GGGGCCCCTC CTGGGTCTGC GTCTGCAGAC ACAGACCAGG GAGCGATTTC 000480 000481 TCAGCGCCTG TGGTAGCTGC TGCGGTGGGA AGCACACGGC AGACCCTGAG CAGGCTGGCC AGTGAGCCAG CCTCTTTCTG 000560 000561 ACGGGACCCA CAGCTCGAAT GTTGGCTGGA TTTGCCTGGG CCAAAATAAG CGGAAGAGTG GCAGAGTGCT TGGGGATCAC 000640 000641 TTCCAATCAC ACCATTCAGA AGGAGAAGCA GTGCACCTCT AGGACAGATG CCTTCAAACG AAGAGGCTGG CTGCTCCCCG 000720 000721 AGAAGGAGGG CCAGGCGGGG TGGTACCAAG CAGTGCCGCT AGAGAAACAT CATTCAGCAG CCTCCTGGAA CACATGGGAG 000800 000801 CCCGGTGGCT GAAATGTCCT TTCCTCCCAG AGTTAGAATA CATAATGTTA GTTAACTCCA CAAATTAGTG CAGTGGCCAT 000880 000881 GACAGTCGAG GCCCCCAGTC CCCAGTCCCC TAGGCTTATA CAACAGACGC CGGTTGTCCC ATCCTTTGCT CAATCCTATT 000960 000961 TAAGACGAGG ATTGTGCACT CCTGGCTGGA GTCCAGGAGG GTGGGAGCCA CTGGGTGGTA GTGGAGCGGC CCTGTCTCCA 001040 001041 GGCCAGACTC TCCTGCTCCT GGCCCTCTTG ACGCTCACAG AGTGGCCTCT GTGGCTGCCG AGCCCTGTGC TGCAGCATAA 001120 001121 ATCCTCAGCT TTTGTCTGTG TTTAATCCCA CCCTGAGAAG TGATATCCAA GTGCAACTGT TTCCAGCCAG GAGCGCAGCT 001200 001201 CCCAGGCCCT GCTGCTGCCT ACCCAAGACA AACAGATGTA ACAAGGAATT TCTAGCACAG TGCTGGTCCT CTGTGTTAAT 001280 001281 AAATGGCCGA CCAGGAGTAC TGGGTAATGC AAGCTGGGAA CTCCCCATCA CACACAGACA CTGGAGCCGG CTCTGACACA 001360 001361 TGGGGCAGAG ACTCGGCCTT TGGTTCCCTG AGGACTGAAT TTACACACCC TCTTAGTTGC CACCCAACTG TTTCTAGCTA 001440 001441 AAGCTATTTT TGAAGTATCC TGAAGGAAAG CACACAAGAC TCTAGCCTCT CCCTGCCTGT CCTGGGTTTC CAAGGTCAGG 001520 001521 ATATGGTGGA AAGACCTGTT CAAGGGACAT GGCATGGAGG GAGCTGTCAC AGTTACAGAG AAGGGAGCCC CCTTTTTGGT 001600 001601 CAAAGGCAAG TATTGTGAAA GGTTACTTTT CTAGAAAGGC ACAAACATCA ACCCAAGCCC CTAATAAAGC GGGGCCCAGT 001680 001681 AAACTGTGCA GATAACTGAA GCACTAAAGA GAGAAAAAGA CATCTAGTCA TTTGTAATAC AGCTTTGGTG CATGATATAT 001760 001761 AACATTTTGT ACATTAAAAG GTTTTTGGCG ATTTCTCTTT AAAGCAGACC ACAAAGTAGA CAAGAGATTG GTTATTATGG 001840 001841 AACACTTGTG TGTTAAACGC GATTTCCATC TCTGCGGCAC CCAATTCCAG AAACGTTAAC TGGACAATCC TCAGGGGATG 001920 001921 GTGGATCATC TGCATCTGTT TCCAGACGTG CATGAAGGAT CTCCTTCGTA CACCTACACA ACCCATGCGA TTTCCCTTGA 002000 002001 ACCATGACTA ACCAGCTGTC TGGACGACAT CCAGGGCGAG TCACAAGAGG CTTGGGAATC CTGGGAGGCT GTTTTCAGAT 002080 002081 TATGGAAATG CAAATCAAAT CCTCCCTGAT ACGACTTCAC ACCCACTAGG ACGGCTATAG AATCAAAAAG ATGGACAATA 002160 002161 ACAAGTGCTG GTGAGGACAT GGAGCAACTG GAACCCTTGC ACACTAACAG GTATACATCC AGCCTGTGTG CAAAAACTTG 002240 002241 TACATGAATG TTTAAGGCTG CATTATTCCT AATAGCCAAA ATGTGGAAAC AACTCAAATG TCCATCAACT GATGAATGGA 002320 002321 CAGACAAAAT GGAATGTGTC CGTACAATGG TGAAGGGGCT TGGCAGACGA GCAGCCCCAT TTAGCCCTAA AAAGGCGTGA 002400 002401 AGGACTGATG CGTGCCGCAA CACAGATGTA CTTTTCATAA AATGTCCAGA TAAAATAAAA ATAAATAAAT AATACAAAGT 002480 002481 CAATAAATAC ATAAAATATC CAGATAAAAT GCTTGACACT ATATAATTAA TAATAAGAAA TAAACTAAAA AAAAGTACAC 002560 002561 CATAA |
Predicted Small Protein
Name | ENST00000514269.1_smProtein_878:1144 |
Length | 89 |
Molecular weight | 9378.8076 |
Aromaticity | 0.0795454545455 |
Instability index | 96.1125 |
Isoelectric point | 7.83636474609 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0470764882529 |
Amino acid sequence | MTVEAPSPQSPRLIQQTPVVPSFAQSYLRRGLCTPGWSPGGWEPLGGSGAALSPGQTLLL LALLTLTEWPLWLPSPVLQHKSSAFVCV |
Secondary structure | LEEELLLLLLLHHHHLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHLLLLLLLLLLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |