ENST00000514269.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000514269.1

Source

Gencode19

Same with

lnc-FAM160A1-2:1,NONHSAT098768

Classification

intronic(AS)

Length

2565 nt

Genomic location

chr4+:152595635..152599045

Exon number

3

Exons

152595635..152597712,152598452..152598583,152598691..152599045

Genome context

Sequence
000001 AAAATATAAG GAAATACAGG AGAGATCAAA AGAGATCACC GGAATTCCCA TTTTCTCAAG AAAACCAATG TTAATATTTT 000080
000081 GGTGTTTTTT CTTCCCATCT TTTTCTTTCT GTTTTGTAAC ATACTTGGGA TCATAACGTA TATTCAGTTT GTGTCCTGCT 000160
000161 TTCTTTCATT TAGCACAGAA GTACTTTCTT AATAAAAAGA TCTAGCTAGT ATCCATCAGA TGTATTTATC ATAATTTATC 000240
000241 CCCTCCTCGT AGATATCTAG ACTTTGACCA GTGTTGATTT TGTTCATCTG CACAGACTCC CAAAAAAGCT CCTAGCTGAA 000320
000321 AACCTGGCTC AAAACAGAAA CCACCTGTAA GGACTTGCTC GTGAAAAATC TACGCAGCAG TTCCCTCCAG GAAAACCAGG 000400
000401 CGGACGAGCA GCCTGTGCCT GGAAGTAGGC GGGGCCCCTC CTGGGTCTGC GTCTGCAGAC ACAGACCAGG GAGCGATTTC 000480
000481 TCAGCGCCTG TGGTAGCTGC TGCGGTGGGA AGCACACGGC AGACCCTGAG CAGGCTGGCC AGTGAGCCAG CCTCTTTCTG 000560
000561 ACGGGACCCA CAGCTCGAAT GTTGGCTGGA TTTGCCTGGG CCAAAATAAG CGGAAGAGTG GCAGAGTGCT TGGGGATCAC 000640
000641 TTCCAATCAC ACCATTCAGA AGGAGAAGCA GTGCACCTCT AGGACAGATG CCTTCAAACG AAGAGGCTGG CTGCTCCCCG 000720
000721 AGAAGGAGGG CCAGGCGGGG TGGTACCAAG CAGTGCCGCT AGAGAAACAT CATTCAGCAG CCTCCTGGAA CACATGGGAG 000800
000801 CCCGGTGGCT GAAATGTCCT TTCCTCCCAG AGTTAGAATA CATAATGTTA GTTAACTCCA CAAATTAGTG CAGTGGCCAT 000880
000881 GACAGTCGAG GCCCCCAGTC CCCAGTCCCC TAGGCTTATA CAACAGACGC CGGTTGTCCC ATCCTTTGCT CAATCCTATT 000960
000961 TAAGACGAGG ATTGTGCACT CCTGGCTGGA GTCCAGGAGG GTGGGAGCCA CTGGGTGGTA GTGGAGCGGC CCTGTCTCCA 001040
001041 GGCCAGACTC TCCTGCTCCT GGCCCTCTTG ACGCTCACAG AGTGGCCTCT GTGGCTGCCG AGCCCTGTGC TGCAGCATAA 001120
001121 ATCCTCAGCT TTTGTCTGTG TTTAATCCCA CCCTGAGAAG TGATATCCAA GTGCAACTGT TTCCAGCCAG GAGCGCAGCT 001200
001201 CCCAGGCCCT GCTGCTGCCT ACCCAAGACA AACAGATGTA ACAAGGAATT TCTAGCACAG TGCTGGTCCT CTGTGTTAAT 001280
001281 AAATGGCCGA CCAGGAGTAC TGGGTAATGC AAGCTGGGAA CTCCCCATCA CACACAGACA CTGGAGCCGG CTCTGACACA 001360
001361 TGGGGCAGAG ACTCGGCCTT TGGTTCCCTG AGGACTGAAT TTACACACCC TCTTAGTTGC CACCCAACTG TTTCTAGCTA 001440
001441 AAGCTATTTT TGAAGTATCC TGAAGGAAAG CACACAAGAC TCTAGCCTCT CCCTGCCTGT CCTGGGTTTC CAAGGTCAGG 001520
001521 ATATGGTGGA AAGACCTGTT CAAGGGACAT GGCATGGAGG GAGCTGTCAC AGTTACAGAG AAGGGAGCCC CCTTTTTGGT 001600
001601 CAAAGGCAAG TATTGTGAAA GGTTACTTTT CTAGAAAGGC ACAAACATCA ACCCAAGCCC CTAATAAAGC GGGGCCCAGT 001680
001681 AAACTGTGCA GATAACTGAA GCACTAAAGA GAGAAAAAGA CATCTAGTCA TTTGTAATAC AGCTTTGGTG CATGATATAT 001760
001761 AACATTTTGT ACATTAAAAG GTTTTTGGCG ATTTCTCTTT AAAGCAGACC ACAAAGTAGA CAAGAGATTG GTTATTATGG 001840
001841 AACACTTGTG TGTTAAACGC GATTTCCATC TCTGCGGCAC CCAATTCCAG AAACGTTAAC TGGACAATCC TCAGGGGATG 001920
001921 GTGGATCATC TGCATCTGTT TCCAGACGTG CATGAAGGAT CTCCTTCGTA CACCTACACA ACCCATGCGA TTTCCCTTGA 002000
002001 ACCATGACTA ACCAGCTGTC TGGACGACAT CCAGGGCGAG TCACAAGAGG CTTGGGAATC CTGGGAGGCT GTTTTCAGAT 002080
002081 TATGGAAATG CAAATCAAAT CCTCCCTGAT ACGACTTCAC ACCCACTAGG ACGGCTATAG AATCAAAAAG ATGGACAATA 002160
002161 ACAAGTGCTG GTGAGGACAT GGAGCAACTG GAACCCTTGC ACACTAACAG GTATACATCC AGCCTGTGTG CAAAAACTTG 002240
002241 TACATGAATG TTTAAGGCTG CATTATTCCT AATAGCCAAA ATGTGGAAAC AACTCAAATG TCCATCAACT GATGAATGGA 002320
002321 CAGACAAAAT GGAATGTGTC CGTACAATGG TGAAGGGGCT TGGCAGACGA GCAGCCCCAT TTAGCCCTAA AAAGGCGTGA 002400
002401 AGGACTGATG CGTGCCGCAA CACAGATGTA CTTTTCATAA AATGTCCAGA TAAAATAAAA ATAAATAAAT AATACAAAGT 002480
002481 CAATAAATAC ATAAAATATC CAGATAAAAT GCTTGACACT ATATAATTAA TAATAAGAAA TAAACTAAAA AAAAGTACAC 002560
002561 CATAA
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Predicted Small Protein

Name ENST00000514269.1_smProtein_878:1144
Length 89
Molecular weight 9378.8076
Aromaticity 0.0795454545455
Instability index 96.1125
Isoelectric point 7.83636474609
Runs 11
Runs residual 0.00636363636364
Runs probability 0.0470764882529
Amino acid sequence MTVEAPSPQSPRLIQQTPVVPSFAQSYLRRGLCTPGWSPGGWEPLGGSGAALSPGQTLLL
LALLTLTEWPLWLPSPVLQHKSSAFVCV
Secondary structure LEEELLLLLLLHHHHLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH
HHHHHHLLLLLLLLLLLLLLLLLEEEEL
PRMN -
PiMo -