ENST00000514377.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000514377.1

Source

Gencode19

Same with

lnc-LIFR-3:2,NONHSAT101089

Classification

intronic(AS)

Length

539 nt

Genomic location

chr5-:38401171..38403464

Exon number

3

Exons

38401171..38401323,38401926..38402183,38403337..38403464

Genome context

Sequence
000001 TCATATGCTG AGGTTGCTAA GATCTATGGC AAGAATGAAT CTTCTATCTG TGAAACTGTG AAGAAGGAAA ATGAAATTTA 000080
000081 TGCTAGTTCT GCTGCATATA TAGGGTTCAG TATTATCTGC AGTTTCAGCC TACCTATTCT CCCAGAGGGC ATGCATTCTA 000160
000161 TGGAGACAGA GCTGAATGTG TGCCATCAGA AGACCAAAAT CAAGCGACAT TTTAAAAAGA AAACAGACTC TTCTGGGAAA 000240
000241 AATGGTGACT CCACAAAGTA AGAAGCCACC AAGACTTGTA GGACATTCCT TCATCTTCTC CTGGATGGGG CAACCCAGCC 000320
000321 ATGGATATAT GCCTCCAATC AGCATAAATG CCCATTGCTT GATAAAGTCA ACACACGTGT AAGATGGAAA TTCTGTTTCT 000400
000401 TGAAGGGAAC TCCTCAGAGA AAAGGACCAC AAGCAAATTG CTGCTGCTAC AAAATGATAC CATAATGAGA ATGGAAATAA 000480
000481 TCCTGGATTC TCTGCTCATT TCGACAAGTA AAATAAGGCA CATATTTTTC AATGGATAA
[back to top]

Predicted Small Protein

Name ENST00000514377.1_smProtein_383:538
Length 52
Molecular weight 5911.9094
Aromaticity 0.0588235294118
Instability index 49.0490196078
Isoelectric point 6.53692626953
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0497752654615
Amino acid sequence MEILFLEGNSSEKRTTSKLLLLQNDTIMRMEIILDSLLISTSKIRHIFFNG
Secondary structure LEEEEELLLLLLLLLHHHHHHHHLLHHHHHHHHHHHHHHLLLLLLEEEELL
PRMN -
PiMo -