ENST00000517964.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000517964.1 |
Source |
Gencode19 |
Same with |
lnc-CDCA2-1:1,NONHSAT125633 |
Classification |
intergenic |
Length |
1131 nt |
Genomic location |
chr8+:25543314..25545040 |
Exon number |
2 |
Exons |
25543314..25543428,25544025..25545040 |
Genome context |
|
Sequence |
000001 CGTGTGTGCA CGTCTGTGTG TGTGCTTCAG TCACAGAAGG GGGTGAGAAG TGGGAAGAGG GGATTTGCAT AGAACCTCCA 000080
000081 ATTTTCCTTA TTTCCTAGGG AGTTGATGAT TTCAGCCAAA TATAAGTCTT AACGTTACAT CTGCAATGGA AAAACAAGTC 000160 000161 AAACTCAGCA AAAAGGAGCC CTGAAGAGAC AGAGTTAAGT GCTTCCGTGA TGAGAGTAGA GTTGGCCTAT GCTGTCCCTC 000240 000241 CCAGGACTCC TTTACCCAAG AGAAAGAGAG AGTGTGCATC CAAAGGGGAG TGAAAATAGA ATATAAATAG GGAAAATAGA 000320 000321 ACCATTCAGA GCAGTTCAGG GATCTTTACT ACTCTGACAT GGAAGGAAGA AGGAGGAGAA GAGAAAAGAT GAACGGACCT 000400 000401 TGAACCTGGG ATATCGCTCA TGTGACTGCT ACATTGGTAT TAAGATACAG CATTCATGTG CCCTGGAATG TTTTGTTCTA 000480 000481 TTAGGTGCTA CACCCAGTAG AACAGTGCTC CATCCAATGC AATTTTCTGG AATTTAAACA ATCCAGACCA GAATTTTTCC 000560 000561 TCCTTGGAGA TGGAATGTCT TGCTCCAGAG GGAGGAGGAA GAAGAGAAAA GAGAAGTCTC AACCAGCCTC CTCTCTACCC 000640 000641 CACACAGAGA ATAGAGATGC AAAACTTCTC CCATAGAGTG TTTCAGCTTC TTCCTCGTTC CTCTTGCTTC TTTTCTCTTG 000720 000721 GGATAATGAC TTGGGTTTGG CCAGTATGTA AAGTTGACTT GTGGTACCTC TGGCTCTTCT CCAGGGGTGC TCACAGAAAT 000800 000801 AACTACAGTG GACTAGAATG AGATGCTTGA AACCTTCCCC CGAGCCTAGC TCTGCATTTA GGAGAACAGC ACAGCGCACC 000880 000881 ATGATCTGAT ATAGGTATAG GTGGGTGGGA GTCTCAGTCT GTAGTTCTAT ATCACCTATT AAGAGACTGG AACCTGGTCC 000960 000961 CATGTTTTCT GCAGGAGGTT GAGCTCTTAA CAATGTGCCA AGCCAGCAGC TGTGCCCTAG AGTCTTGGCC TAAGACAAGC 001040 001041 AAATAATTGT CAGATGACTG AATAGTTCTG TTTCCTTATT AAATCTTAGG TTTAGAATTC CTTTCACAAT TAAAAAGATT 001120 001121 TGGACAACAA C |
Predicted Small Protein
Name | ENST00000517964.1_smProtein_569:820 |
Length | 84 |
Molecular weight | 9834.2725 |
Aromaticity | 0.144578313253 |
Instability index | 64.0590361446 |
Isoelectric point | 9.34979248047 |
Runs | 15 |
Runs residual | 0.0406961178046 |
Runs probability | 0.036065477242 |
Amino acid sequence | MECLAPEGGGRREKRSLNQPPLYPTQRIEMQNFSHRVFQLLPRSSCFFSLGIMTWVWPVC KVDLWYLWLFSRGAHRNNYSGLE |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHEELLLLLEEEELLEEEEEEEEL LEEHHHHHHHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTT TTTTToooooooooooooooooo |