ENST00000525424.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000525424.1 |
Source |
Gencode19 |
Same with |
lnc-STX16-2:1,NONHSAT080556 |
Classification |
intergenic |
Length |
507 nt |
Genomic location |
chr20+:57169473..57179029 |
Exon number |
2 |
Exons |
57169473..57169602,57178653..57179029 |
Genome context |
|
Sequence |
000001 ATTCTTCATT TAGCTGGGTA AAGTCCTGAG CTCTTCTGGA AAAATGAGCC CATGGAAAGC AAGACTGGGA GCCTCCAGCA 000080
000081 GGAGAAAGCA GGGCAGTGGG GGTGGCTGTG CCCCCCTGCC TCCCAGCCAG TGTTTTTCGA AGAGCATCCT GAGTGAATTT 000160 000161 GATTCTCCCT TCTCAGCCTC AGTTTCTTTA CCTTGAAATG GGGCTGATGA TCCCATCTTC AGGCAGGAAT ATTTTTCAAA 000240 000241 GCACTTTGTG GACCACACAG TCCCTCATCT CCCTTCTCCT TCCAGGCTGT CATCAGCTCC TTGAAACTAT ACTCTAGCTT 000320 000321 CTCCCAGACT CTAAGACATC CATTTTCTCA TGAATTCATT TGCTGAAAAC ATTCCTGGAG CCTGAGCTGT TCCAGATGCT 000400 000401 AAATGCTGGT GATTCCACAG CAGACAAAAG AAAATTCCTG CTTTCATGGG GCTTCTTGTG AGGACAATGA CACTGGGCCA 000480 000481 ACACAAAAAT GAAAGTTGAT CAGAGCA |
Predicted Small Protein
Name | ENST00000525424.1_smProtein_197:316 |
Length | 40 |
Molecular weight | 4314.0983 |
Aromaticity | 0.0512820512821 |
Instability index | 74.3666666667 |
Isoelectric point | 6.49822998047 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.021487874429 |
Amino acid sequence | MGLMIPSSGRNIFQSTLWTTQSLISLLLPGCHQLLETIL |
Secondary structure | LEEEELLLLLLHHHHHHHHHHHHHHHHLLLHHHHHHHHL |
PRMN | - |
PiMo | - |