ENST00000539717.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000539717.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
1084 nt |
Genomic location |
chr3+:195384938..195400708 |
Exon number |
8 |
Exons |
195384938..195385036,195389442..195389604,195390957..195391121,195392937..195393085,195395390..195395512,195398003..195398171,195399355..195399550,195400689..195400708 |
Genome context |
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Sequence |
000001 TGGCGGGACT GCGCGGCGGC GACTACAGAC GTGTCGGGGG TCCGGGGCCT GTCGCGGTTG CCAAGCGCTC GGCGCTTGGC 000080
000081 GCTGGCGCTG GCCAAGGCGA TTTCTGCTCA GTATCCAGTA GTGGATCATG AATTTGATGC AGTGGTGGTA GGCGCTGGAG 000160 000161 GGGCAGGCTT TGCGAGCTGC ATTTGGCCTT TCCGAGGCAG AGTTTGATAC AGCATGTGTT ACCAAGCTGT TTCCTACCAG 000240 000241 GTCACACACT GTTGCAGCGC AGGTAGAAAA TTATGGCATG CCGTTTAGCA GAACTGAAGA TGGGAAGATT TATCAGCGTG 000320 000321 CATTTGGCGG ACACAGCCTC AAGTTTGGAA AGGGCAGGCA GGCCCATCGG TGCTGCTGTG TGGCTGATCG GACCGGCCAC 000400 000401 TCAATATTGC ACACCTTATA TGGGAGGTCT CTGCGATATG ATACCAGCTG TTTTGTGGAG TATTTTGCCT TGGATCTCCT 000480 000481 GATGGAGAAT GGGGAGTGCC GTGGTGTCTT CGCACTGTGC ATACAGGACG GGTCCATCCA TCGCATAAGA GCAAAGAATA 000560 000561 CTATTGTTGC CACAGGGCTA CGGGCGCACC TACTTGAGCT GCACGTCTGC CCACACCAGC ACCAGCGACG GCACGGCCAT 000640 000641 GATCACCAGG GCAGGCCTTC CTTGCCAGGA CCTCGAGTTT GTTCAGTTCC ACCCCACAGG CACATATGGT GCTGGTTGTC 000720 000721 TCATTACGGA AGGATGTCGT GGAGAGGGAG GCATTCTCAT TAACAGTCAA GGCGAAAGGT TTATGGAGCG ATACGCCCCC 000800 000801 ATCGCGAAGG ACCTGGCGTC TAGAGATGTG GTGTCTCGGT GGATGACTCT GGAGATCCGC GAAGGAAGAG GCTGTGGCCC 000880 000881 TGAGAAAGAT CACGTCTACC TGCAGCTGCA CCACCTACCT CCAGAGCAGC TGGCCATGCC CTTGCCCGGC ATTTCAGAGA 000960 000961 CAGCCATGAT CTTCGCTGGT GTGGACGTCA CGAAGGAGCC GATCCCTGTC CTCCCCACCG TGCATTATAA CATGGACGGC 001040 001041 ATTCCCACCA GCTACGAGGG GCAGGTCCTG AGGCACGGGA ATGG |
Predicted Small Protein
Name | ENST00000539717.1_smProtein_272:481 |
Length | 70 |
Molecular weight | 7478.8468 |
Aromaticity | 0.0869565217391 |
Instability index | 51.4869565217 |
Isoelectric point | 7.73956298828 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0671500377383 |
Amino acid sequence | MACRLAELKMGRFISVHLADTASSLERAGRPIGAAVWLIGPATQYCTPYMGGLCDMIPAV LWSILPWIS |
Secondary structure | LHHHHHHHHLLLEEEEELLLHHHHHHHLLLLLLLEEEELLLLLLLLLLLLLLHHHHHHHH HHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHH HHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTT TTTTTTTTi |