ENST00000539717.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000539717.1

Source

Gencode19

Same with

,

Classification

intergenic

Length

1084 nt

Genomic location

chr3+:195384938..195400708

Exon number

8

Exons

195384938..195385036,195389442..195389604,195390957..195391121,195392937..195393085,195395390..195395512,195398003..195398171,195399355..195399550,195400689..195400708

Genome context

Sequence
000001 TGGCGGGACT GCGCGGCGGC GACTACAGAC GTGTCGGGGG TCCGGGGCCT GTCGCGGTTG CCAAGCGCTC GGCGCTTGGC 000080
000081 GCTGGCGCTG GCCAAGGCGA TTTCTGCTCA GTATCCAGTA GTGGATCATG AATTTGATGC AGTGGTGGTA GGCGCTGGAG 000160
000161 GGGCAGGCTT TGCGAGCTGC ATTTGGCCTT TCCGAGGCAG AGTTTGATAC AGCATGTGTT ACCAAGCTGT TTCCTACCAG 000240
000241 GTCACACACT GTTGCAGCGC AGGTAGAAAA TTATGGCATG CCGTTTAGCA GAACTGAAGA TGGGAAGATT TATCAGCGTG 000320
000321 CATTTGGCGG ACACAGCCTC AAGTTTGGAA AGGGCAGGCA GGCCCATCGG TGCTGCTGTG TGGCTGATCG GACCGGCCAC 000400
000401 TCAATATTGC ACACCTTATA TGGGAGGTCT CTGCGATATG ATACCAGCTG TTTTGTGGAG TATTTTGCCT TGGATCTCCT 000480
000481 GATGGAGAAT GGGGAGTGCC GTGGTGTCTT CGCACTGTGC ATACAGGACG GGTCCATCCA TCGCATAAGA GCAAAGAATA 000560
000561 CTATTGTTGC CACAGGGCTA CGGGCGCACC TACTTGAGCT GCACGTCTGC CCACACCAGC ACCAGCGACG GCACGGCCAT 000640
000641 GATCACCAGG GCAGGCCTTC CTTGCCAGGA CCTCGAGTTT GTTCAGTTCC ACCCCACAGG CACATATGGT GCTGGTTGTC 000720
000721 TCATTACGGA AGGATGTCGT GGAGAGGGAG GCATTCTCAT TAACAGTCAA GGCGAAAGGT TTATGGAGCG ATACGCCCCC 000800
000801 ATCGCGAAGG ACCTGGCGTC TAGAGATGTG GTGTCTCGGT GGATGACTCT GGAGATCCGC GAAGGAAGAG GCTGTGGCCC 000880
000881 TGAGAAAGAT CACGTCTACC TGCAGCTGCA CCACCTACCT CCAGAGCAGC TGGCCATGCC CTTGCCCGGC ATTTCAGAGA 000960
000961 CAGCCATGAT CTTCGCTGGT GTGGACGTCA CGAAGGAGCC GATCCCTGTC CTCCCCACCG TGCATTATAA CATGGACGGC 001040
001041 ATTCCCACCA GCTACGAGGG GCAGGTCCTG AGGCACGGGA ATGG
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Predicted Small Protein

Name ENST00000539717.1_smProtein_272:481
Length 70
Molecular weight 7478.8468
Aromaticity 0.0869565217391
Instability index 51.4869565217
Isoelectric point 7.73956298828
Runs 11
Runs residual 0.0200889654183
Runs probability 0.0671500377383
Amino acid sequence MACRLAELKMGRFISVHLADTASSLERAGRPIGAAVWLIGPATQYCTPYMGGLCDMIPAV
LWSILPWIS
Secondary structure LHHHHHHHHLLLEEEEELLLHHHHHHHLLLLLLLEEEELLLLLLLLLLLLLLHHHHHHHH
HHHHLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHH
HHHHHHHHL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTT
TTTTTTTTi