ENST00000541173.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000541173.1 |
Source |
Gencode19 |
Same with |
lnc-C1orf131-1:2,NONHSAT010158 |
Classification |
sense |
Length |
2293 nt |
Genomic location |
chr1-:231319851..231322143 |
Exon number |
1 |
Exons |
231319851..231322143 |
Genome context |
|
Sequence |
000001 TGTGGTACTT TGCTCTGGCA ACCCTAGCAA AGAATACAGA GGGACTAAAA GGAGGTCCAC GGATGCGCTG CTGAAACCAG 000080
000081 GAATCCAGGT CAGGCCCGAT TTGTCCTGTT CCAACTAGAG ATGTGCTCCT CCTTCAGGAA GAAATCCTGC TTTTGCCAGA 000160 000161 ATGTACTCTT GTCTCTCCTT CTGGCCCTTT GGGCTCAAGA GTTCCACTGC TGTGATTCAT GCAGAACAAA GAGGGAGCGC 000240 000241 CTCAGCCTGG CTGTCAAGCC CTTCATCCAT TCACCGATGT ATTCATTCAG CAAGCGACTG CCAGCCGCCT ATCAGGAGAG 000320 000321 AGGTGAGTTC TGCTCACGGG GAACATCCCC TTCTTTTTCC CTGGGAAAAT CTGCAACCCA AGCACCTATC TTCCAGAAGA 000400 000401 CCCACCTCCT TCTCGTCTCC TCTAGTTATG AGCCCTTGTC CCGGCTGTCA CGGCCGTTTA TCACACTCAT CTCCAGTCCT 000480 000481 AGCTCAGCTT GCCCACGTCC AACTCAAATC CTCCTTTTCC ACGAAGTCTT CCCCCCAGAC TCCATGAACT TTGTGGTTCA 000560 000561 TCTCTGTTCT GCCATCACCT CTCGCTTACC TCCGACTGTG GCCCTCGCCA TCATCTGTCT GAGGTCTTAG TTACTTATCT 000640 000641 ACTTGACCGT GTCCCTCACT AGATCAGGAC TTCCAGAGTG AGCCGTTCAA TCATCTTTGT GTCCCTAGTA CAGAGCCTGT 000720 000721 GCAGAACGGG CACTCAACAG TGTCTTCTGA ATTCACTGAT TTCGTGCTGT GTGCTCTGGG GAGCTGCAAA AGGGCAGGAC 000800 000801 GCGTCTGGGC TCCCCTAGGC AAAGGTCCCA GTGCTGCAGC CCAAGGCATC CTCTGTGTCT CCTACTAGGG ATCCCACTTC 000880 000881 TCACTCTCGA TGTGGCCTCC CCTCGCTGCC TGTTCATCCC GGCTCACTCC CTGGTCCTGC ACTGGGGGCT GGAACACAGA 000960 000961 CTTCCTGGGG GTCCCGCCGT GGTGGGAGCT CCTGGGTTCC ACTTGTTTGG GTTGTTTTAG ATTCTTCCCC ACTTCAGATG 001040 001041 AGGAAAACAA GAGCCATTCT CCCTTCTGAC TTTCCTTCCT TTTCTTTTCT CAGATCCCTC CAGTGTAGGA GGGTGGGAGG 001120 001121 GAGAGCTGGT CCAGGGGTGA GGGGAGACTC CTTTCTCACA GGGAGTTTTC AGATAAAGGC TCTGGGAATC CTGAGAAGGG 001200 001201 TGGAAGGTGC AGGAATGGAC GCCGTGGAGT ACAGGCTGGC TGGCTGGACA ACACACACTT CCCATTGAGC CAGCAACTCG 001280 001281 GATTTAGGAG CCAGCAGATG GTGACCGAAG TGCCCTGCTC TCTGGAAGTC CAGGCACCAG CTCAGCTCCA CACTAGCCTA 001360 001361 GGCCCTGCAA GCAGAATAAG CTGACCCTCC CCAACCTGCC GGCCACCCAT TCAGGAGCAC TGCTGGGTGT TTATCCAGCA 001440 001441 ACCCTTAGAG CTGGGCTTCA GGGTTGGGCC CTGAATTCAA ACCCTAATTT TACGTGACCT AGTTTCTTGC CCTCTGTGAG 001520 001521 ACTTCGTGTC CTCACGTGTG AATTGGGGTG ATGATACCCA CCCCAAAGGC CTGCCTCAAG GTTTAATGAT GGTGTGCATG 001600 001601 GAAGGCCCTG GGTTCAGGGA CTGGCACTCT ACTCATGGTG GTTCTCGGTA GAATGAGAAC CCCAGAGAGA GCTTCCCCGA 001680 001681 CAGCTGCAGG GACCATTGTT TTTCTGCTGT TGACCTTCCA TTATCCTCTA TAACAGTATC CCAATTTTGC TTTGAGAAGT 001760 001761 TGCCTTTTCT CCACTGAGCA CAGCCTGGTA GGGCTGGAAT TAGGACTCCA GTACCACTGC CTTCACCCTG ACAAGGGGTA 001840 001841 GGCACATGCC TGTGTGAACC CTGAGAGAGC CAGCCCTTCG AGATGGATCC TGAGGGGCTA TCCGGGTCTG AATTCTGAGT 001920 001921 GGCGCTGAAA GCCATTTGCC TACTGCAGGT TCCCTACATG CCCTGTGCAA GCCGAACAGT AGCTCAATGT TGGGGCCTTC 002000 002001 TTAGCTGTCT GTTCCTGCTC ACACTGCCAG AATCAACTGC TGCCGACGTC CTCATTCTAC CACCTGAACC TGACCAATGA 002080 002081 AATGTGACCC GTGGTCAACT TTAACATCAG CAAATCAGAA CTGAACAAGC TTGCATCCCT CAGATGCAAT GGGAACTGGG 002160 002161 ATTAGAATCT AAGCAGAAAC TTTTTCTATG CAGGATAGCC CTTCTCTTTG TTCTGGCAGA CGTGCCTTTG TTTTATACTG 002240 002241 AAGGCTGAGT CTCCCCAGTT GGCAAACTGC TGGTTGGAAT AAAGACTCTT TTT |
Predicted Small Protein
Name | ENST00000541173.1_smProtein_1037:1267 |
Length | 77 |
Molecular weight | 8352.5177 |
Aromaticity | 0.0921052631579 |
Instability index | 46.1947368421 |
Isoelectric point | 11.4276733398 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.02303887598 |
Amino acid sequence | MRKTRAILPSDFPSFSFLRSLQCRRVGGRAGPGVRGDSFLTGSFQIKALGILRRVEGAGM DAVEYRLAGWTTHTSH |
Secondary structure | LLLEEEELLLLLLLLLHHHLLEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLL LLLLHHHLLLEELLLL |
PRMN | - |
PiMo | - |