ENST00000541173.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000541173.1

Source

Gencode19

Same with

lnc-C1orf131-1:2,NONHSAT010158

Classification

sense

Length

2293 nt

Genomic location

chr1-:231319851..231322143

Exon number

1

Exons

231319851..231322143

Genome context

Sequence
000001 TGTGGTACTT TGCTCTGGCA ACCCTAGCAA AGAATACAGA GGGACTAAAA GGAGGTCCAC GGATGCGCTG CTGAAACCAG 000080
000081 GAATCCAGGT CAGGCCCGAT TTGTCCTGTT CCAACTAGAG ATGTGCTCCT CCTTCAGGAA GAAATCCTGC TTTTGCCAGA 000160
000161 ATGTACTCTT GTCTCTCCTT CTGGCCCTTT GGGCTCAAGA GTTCCACTGC TGTGATTCAT GCAGAACAAA GAGGGAGCGC 000240
000241 CTCAGCCTGG CTGTCAAGCC CTTCATCCAT TCACCGATGT ATTCATTCAG CAAGCGACTG CCAGCCGCCT ATCAGGAGAG 000320
000321 AGGTGAGTTC TGCTCACGGG GAACATCCCC TTCTTTTTCC CTGGGAAAAT CTGCAACCCA AGCACCTATC TTCCAGAAGA 000400
000401 CCCACCTCCT TCTCGTCTCC TCTAGTTATG AGCCCTTGTC CCGGCTGTCA CGGCCGTTTA TCACACTCAT CTCCAGTCCT 000480
000481 AGCTCAGCTT GCCCACGTCC AACTCAAATC CTCCTTTTCC ACGAAGTCTT CCCCCCAGAC TCCATGAACT TTGTGGTTCA 000560
000561 TCTCTGTTCT GCCATCACCT CTCGCTTACC TCCGACTGTG GCCCTCGCCA TCATCTGTCT GAGGTCTTAG TTACTTATCT 000640
000641 ACTTGACCGT GTCCCTCACT AGATCAGGAC TTCCAGAGTG AGCCGTTCAA TCATCTTTGT GTCCCTAGTA CAGAGCCTGT 000720
000721 GCAGAACGGG CACTCAACAG TGTCTTCTGA ATTCACTGAT TTCGTGCTGT GTGCTCTGGG GAGCTGCAAA AGGGCAGGAC 000800
000801 GCGTCTGGGC TCCCCTAGGC AAAGGTCCCA GTGCTGCAGC CCAAGGCATC CTCTGTGTCT CCTACTAGGG ATCCCACTTC 000880
000881 TCACTCTCGA TGTGGCCTCC CCTCGCTGCC TGTTCATCCC GGCTCACTCC CTGGTCCTGC ACTGGGGGCT GGAACACAGA 000960
000961 CTTCCTGGGG GTCCCGCCGT GGTGGGAGCT CCTGGGTTCC ACTTGTTTGG GTTGTTTTAG ATTCTTCCCC ACTTCAGATG 001040
001041 AGGAAAACAA GAGCCATTCT CCCTTCTGAC TTTCCTTCCT TTTCTTTTCT CAGATCCCTC CAGTGTAGGA GGGTGGGAGG 001120
001121 GAGAGCTGGT CCAGGGGTGA GGGGAGACTC CTTTCTCACA GGGAGTTTTC AGATAAAGGC TCTGGGAATC CTGAGAAGGG 001200
001201 TGGAAGGTGC AGGAATGGAC GCCGTGGAGT ACAGGCTGGC TGGCTGGACA ACACACACTT CCCATTGAGC CAGCAACTCG 001280
001281 GATTTAGGAG CCAGCAGATG GTGACCGAAG TGCCCTGCTC TCTGGAAGTC CAGGCACCAG CTCAGCTCCA CACTAGCCTA 001360
001361 GGCCCTGCAA GCAGAATAAG CTGACCCTCC CCAACCTGCC GGCCACCCAT TCAGGAGCAC TGCTGGGTGT TTATCCAGCA 001440
001441 ACCCTTAGAG CTGGGCTTCA GGGTTGGGCC CTGAATTCAA ACCCTAATTT TACGTGACCT AGTTTCTTGC CCTCTGTGAG 001520
001521 ACTTCGTGTC CTCACGTGTG AATTGGGGTG ATGATACCCA CCCCAAAGGC CTGCCTCAAG GTTTAATGAT GGTGTGCATG 001600
001601 GAAGGCCCTG GGTTCAGGGA CTGGCACTCT ACTCATGGTG GTTCTCGGTA GAATGAGAAC CCCAGAGAGA GCTTCCCCGA 001680
001681 CAGCTGCAGG GACCATTGTT TTTCTGCTGT TGACCTTCCA TTATCCTCTA TAACAGTATC CCAATTTTGC TTTGAGAAGT 001760
001761 TGCCTTTTCT CCACTGAGCA CAGCCTGGTA GGGCTGGAAT TAGGACTCCA GTACCACTGC CTTCACCCTG ACAAGGGGTA 001840
001841 GGCACATGCC TGTGTGAACC CTGAGAGAGC CAGCCCTTCG AGATGGATCC TGAGGGGCTA TCCGGGTCTG AATTCTGAGT 001920
001921 GGCGCTGAAA GCCATTTGCC TACTGCAGGT TCCCTACATG CCCTGTGCAA GCCGAACAGT AGCTCAATGT TGGGGCCTTC 002000
002001 TTAGCTGTCT GTTCCTGCTC ACACTGCCAG AATCAACTGC TGCCGACGTC CTCATTCTAC CACCTGAACC TGACCAATGA 002080
002081 AATGTGACCC GTGGTCAACT TTAACATCAG CAAATCAGAA CTGAACAAGC TTGCATCCCT CAGATGCAAT GGGAACTGGG 002160
002161 ATTAGAATCT AAGCAGAAAC TTTTTCTATG CAGGATAGCC CTTCTCTTTG TTCTGGCAGA CGTGCCTTTG TTTTATACTG 002240
002241 AAGGCTGAGT CTCCCCAGTT GGCAAACTGC TGGTTGGAAT AAAGACTCTT TTT
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Predicted Small Protein

Name ENST00000541173.1_smProtein_1037:1267
Length 77
Molecular weight 8352.5177
Aromaticity 0.0921052631579
Instability index 46.1947368421
Isoelectric point 11.4276733398
Runs 13
Runs residual 0.0296430732002
Runs probability 0.02303887598
Amino acid sequence MRKTRAILPSDFPSFSFLRSLQCRRVGGRAGPGVRGDSFLTGSFQIKALGILRRVEGAGM
DAVEYRLAGWTTHTSH
Secondary structure LLLEEEELLLLLLLLLHHHLLEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLL
LLLLHHHLLLEELLLL
PRMN -
PiMo -