ENST00000547893.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000547893.1 |
Source |
Gencode19 |
Same with |
lnc-GJA10-3:5 |
Classification |
sense |
Length |
2003 nt |
Genomic location |
chr6+:90539650..90567068 |
Exon number |
6 |
Exons |
90539650..90541058,90556281..90556363,90562885..90562953,90564536..90564636,90565189..90565263,90566803..90567068 |
Genome context |
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Sequence |
000001 GCGGGTAAGT TGTCGTAGGG GCCCGGTCCG TGAGGGACTG CTAAGGAAGA GGCTGCATGG CGCGGTAGTC CCCCGAGTGG 000080
000081 AGGTCGGCTG CCCCTGGGAA ACCAGAGAGT CGGAGGGAGT CCATCTGGAG CGGCCAAGTA GGTCGGGGAA GGGCCGCGCC 000160 000161 TGACGTCTGG CCGCAGGTAG CCACGTTCCC TCCGCCCCCG GTGCAGCTTC AGGGCTTGCA CCCTGCGTCC CTCTGTGGTC 000240 000241 CTTCGAGAGG GTCTGGGCGG GGACTATGGG TGGGCGCGCC CAGGAATTGT CCCTTCGGCC TCTCGTCCTG CCCCTCCCCC 000320 000321 CCACCATCCA GTCTCTCCTT GGAATATACT CTTAAAATCT TTCGGATGGA GTTCTTTGGA GAAATGGGTT TCCTGGAGTG 000400 000401 TCAGGTGATC ATTGATGTTG ATTGTTTCTG AAATGTTTAT TTAGGCATCA AACCAACATG CCTAAATAAG TTTTTCATTT 000480 000481 CTACAGCGCC TAGATTCATT CCTAGCACAT AGTAGGCCCT AACTCAGATG TGAATGTAGG ATTCGTAGGA GCTGAGCATT 000560 000561 TGTGCTTCAG GCATCAAGTT GTCTTTGACT CTTCGACTCT TCCTTGGTCT TTTTCCATTC TCCACACCTC CAGCAGCAAA 000640 000641 CCTTTCGCCT CTCCTCAAGG CCTTTCCCCC CCATCTCCCT CAGCGCCTCT TTGACTGGAG GGGGACAGAG GCTTTCATGG 000720 000721 CAGGGATTCT CCCATCTCCC TTCCTATCCC CGCTATGCCC TCCAATTATC TTTTCCTGGC GTTCCGTTTT ACAAGAGATG 000800 000801 GCCTTCTTTC CAAAAACATT TATATTGTAT TGAATATTCT TGATTTTGGC CATCTTGCTT TACAGACAGA CCTGGGGTCT 000880 000881 AATTTCAGCT CTGCCACTTA CCAGGTGGTT GCCTTGTGCA AATTTCTTGA TCGTCTGTGT TTTCCTCATC TGTAAAATGG 000960 000961 GGAAAAGAAT AATATGGACC TCATAGAACT CTGGGGAGGA TTTAAACTAA GTGAATAATG TATTTAGATC ATTTAGGTTA 001040 001041 GTGCCTGGAA CATAGTAAAT GTGCCGTATA TGATAGCTTT TGTTAGTATT TGCCCCTTAC CTCTTCTTCT GGGGTCTTGC 001120 001121 TGTATTAGCC TTTCCCATGA GTGTAAAAAT ACACTGTCTT CTCTGGCTTT TTCCTGTTTT TCTCTACAAA TGCTTGTGTT 001200 001201 TTTCTCTAAA TTTTATTTTT TGTCTTTTAG CGTCTACATT AAGGACACAT TCTCAGTTTC GTAATGATTT TTCTTTTTCT 001280 001281 TTTTTCCTTT TTTTTTGAGA CTATAGCCCA GGCTGGAGTG CAATGGCAAG ATCTCGGCTT ACTACAGGTT TGACCTCCTG 001360 001361 TGCTCAAGCA ATCCTCCCAC CTCAGCCTTC CAAGTAGCTG GAACTACAGG TGGTGACTCT CAAAAGGAAA TAGGATCATG 001440 001441 GCAGCAGATG ATGACAATGG TGATGGAACA AGTTTATTTG ATGTCTTTTC TGCTTCTCCT CTTAAGAACA ATGATGAAGG 001520 001521 CTCACTGGAC ATATACGCTG GGTTGGACAG TGCTGTTTCT GACAGCGCTT CCAAATCCTG TGTACCATCA AGAAATTGTT 001600 001601 TGGACTTATA TGAAGAGATC CTGACTGAAG AAGGAACTGC AAAGGAGGCA ACATATAATG ATTTGCAAGT AGAATATGGA 001680 001681 AAATGTCAAC TACAAATGAA AGAGCTGATG AAAAAATTTA AAGAAATACA GACACAGAAT TTCAGCTTAA TAAACGAAAA 001760 001761 CCAGTCTCTT AAGAAGAATA TTTCAGCACT TATCAAAACT GCCAGAGTGG AAATAAACCG CAAGGATGAA GAAATAAGTA 001840 001841 ATCTTCACCA AAGGTATTAC TGAGCGGTGT AGCTGTTATA AATTACGTGG GTATTGATAT GTGGAATATT TTTAACTTTT 001920 001921 AGAGGAAAGA TGAAAATAAT GTATTTTTAT TTTTTATTTT TTAATTTTTT TTTTTTTTTA GAGACAGGGT CTCATTTTGT 002000 002001 CAC |
Predicted Small Protein
Name | ENST00000547893.1_smProtein_1136:1297 |
Length | 54 |
Molecular weight | 6440.6859 |
Aromaticity | 0.264150943396 |
Instability index | 47.1660377358 |
Isoelectric point | 8.90777587891 |
Runs | 6 |
Runs residual | 0.0470547630005 |
Runs probability | 0.0386563033623 |
Amino acid sequence | MSVKIHCLLWLFPVFLYKCLCFSLNFIFCLLASTLRTHSQFRNDFSFSFFLFF |
Secondary structure | LLEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooooooo |