ENST00000555968.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000555968.1 |
Source |
Gencode19 |
Same with |
lnc-THTPA-1:1 |
Classification |
antisense |
Length |
3243 nt |
Genomic location |
chr14+:24030306..24037282 |
Exon number |
4 |
Exons |
24030306..24031082,24033936..24034049,24034665..24036631,24036898..24037282 |
Genome context |
|
Sequence |
000001 AGGCCAGGGA AAGAAGTCTG GAACAAAGGG AAGACAGATG ACCATGATTG ACTTCATTCT TTTACCTCCT GAGATGGCGA 000080
000081 TGGGATGGGG GACACACAGG AAGAAGCAGG GTCCATGAGC CTCAGCCCTT GGCTTAGGAG GAGGAGCAGT ACATTTCCAC 000160 000161 CTACCTTCTC TAAGACATCT TCCCTTTGCT TAGGCTTACC TGGGGGTGGA GGTACACAGG GAAGGTCAAG CAGGTGTACC 000240 000241 AGGGCACCTC CTGGGGAGGG GTCCAGATGG GGAGGATGCT GGACATCCCC AGAAGCCCCA TCCAGGAGAT CTAGCAGATC 000320 000321 CAGGAGCTGT GAGGCCTGGC AGAAGGGACA GAAGGGGCAG GGCTGGGTAT GAAGCTCAGC CCGTCTTCCT ACCCCAGAGT 000400 000401 TTCTAGCCTT CTCACCTGGG GCTCTGTGGG CACTGGGGCT GCTTCTGAAA GCTGGGCTGC TTCTTTGCTT TCCTTTGCTT 000480 000481 CCTCATCAGC CTGAGGGCCA TCTCGCTCCA CAAGAGGCAT TTTTTCCAGG ATGGCAGCCC TGAGAGGATG GAATGCAAGT 000560 000561 GTGCCTCTGT GTGGTCTCTG GGCCTTTCAC AAGAGGCATC TAGGATGAGG ACTAGGAATA TGGAGCCCTG GGCACATGGT 000640 000641 GGCTCAGAAG TACCCTTCTG ATTTCCTAAA ATGACATGTT GTTGCTGATT TTCAGATGAA CAAGGAGGGT TGGAAGCCAG 000720 000721 CTTAGCTTCA ATTAACAGTG GGTGGGAAGC TCTCACCGTG GATATGGAAG AACACAGGGT CTCACTCTGT CGCCCAAAGC 000800 000801 TCACTGCAGC CTTGACCTCC CAGGCTCTGA TGATCCTCCT GCCTCAGCCT CCTGAGTGGC TGGGACTACA GGCACATGCC 000880 000881 AACAAGCCCA GGTCCTGGGA TGACCCGAGC AATCCTGTGC CTGCTACTCT GCTGCCCAGG ACACTGAGAG AACCAGTGTT 000960 000961 CTCTGGGAGG AAACCACTGG TCATGGTCTT ACTGCTATGC CCTCTCTGAT CCAGGGATAC AGCAGTGAAA GGTCACCCCA 001040 001041 CCTGCAGGAA GGGGTCGCTG ACTCCAGATA TGCTGTGTTC TGTGGAGTAT CCCATTGTCA CCAGAGTCCG GAGGATGTGT 001120 001121 ACCAGCTGGG GTACCACCTG GAGGGAGGGC ACAACTTTGG GCATTCGTTC TAATCCTCTC CAGCTAAAGC CCCATTCCTT 001200 001201 CCCCACTGAC CCTGTCTTCC AGGCCCAGGG CCTGCCCCTT CACCAGCCCA CCTTTCGGAA GTGCCTGAGG GCTGCAGGGC 001280 001281 TTCGTTCGCA GAGCTCCGTG ATCAGCGTGA TGGTGCCCAG CAGGATGCCT GGGGTCAGCG TCGGGGAAGT GAATGGTGGG 001360 001361 GGCCAGGGGC AAGAGAGTCT ATTGCGTGTG TGCCTGTGTG TGTGCACTAC CCTTCTCCTG TGAGCTGGGG TTCCCATCCG 001440 001441 ATTTTCAATT CTTCTGTCCA TAGACCTGAA GCAAAGGATG GGGGGCCCCA CAGCCTTACC ATGGTGACGC TCATGAAGCA 001520 001521 GTTGGGCACA GGGTGGGAGG AAGACACTGG AGAGTTCAGG GACCTTCCGG ATCATGTGCA CTGCAGTCAG AATAGCCTGC 001600 001601 AGAGGTCAGG GGCCTCAGAC AGGGGTCAGA GGAGATGGAC CCCTGCATCT ACTACTATAT AGCACGCAGC AGGCAGTGTG 001680 001681 CAGGAGCACG TGCCAGGAGT CCCGCCATCT CACCTTCTTG CGCACGTAGG GACTGGGCTG CAGGAGCAGT TTCTCCACCT 001760 001761 CTGGGGCCAG GTCTCGGCAC ATCTCAGCAG AGCCCATGGT GCTCAAAGTG CACAAGGCCA GGCCTTGTAC TGGCTGAATC 001840 001841 CCCTGGCTCA GGTCACTGCA GGGTTTGGGA GGACGGTCAG TCAAACCTCT GAGAAAATCA GTCCTTTTCA ATACCCACAA 001920 001921 CAGGCAGTCC CCTGGGATTT CCAAGGTCCC TACTCTCCCA TCTCCCTGAT TCCAAGTGAT TGCCAGAACC CTCTCACTTC 002000 002001 TTGATGCTGT TGGTAATGAG CAGGTGGGCA TCGTGCCTCT CATCCAATAG AAGCATGGCC CCCAGGTAGC CCACCCTCTT 002080 002081 GTCTGTGAAT CTGGAGGAGG CGATCAGTTT CAGGCACTCC ATCTATAGTG AAGGGGGCAG ACCAGGAAGA GGCAGGGGTG 002160 002161 AAACCATAGA CACTCACATC CCTGTTCCAT CTTCCTCTTT AAAACCAGAT TAACCTGTGG GGCATCATAT CTCATCACTC 002240 002241 TCCCTTCAAC AAGAGGAGAA GCTTAGGAAA TTCAGGCGTT AGTGGGTAGG AGGAACTAGG AGTTGAGGAG GATGGGAGCG 002320 002321 GAGAGGAGGA GATGCCTGCC CTAAAGGAGG CTGGCCAGAG AATGAAGGGT TCAGGCCAGC TGATGACCAG TAGGGGTAGC 002400 002401 AATGGGGAAA GAGGTTTGCA GTGCAGGCTG TGAAGACTCT GAAATTGTAG AATTTAAAAA ACCAGGGCAT AAACAGGTGA 002480 002481 GAGAGTCTGG GACTCTGCCC CACTAGCCTT CATCAAGCTC AGGAGGGAGG TATTCCTGGC CAGTACCTGT CCAAAGTGGG 002560 002561 CGGGGTAGCC CAACATGTGG ACGTAGAGCA GTTTGGCCAG CTGCCGGTGC CTGTGCACTG GGTCCCCGTC GCGGAAGGAG 002640 002641 GCCCGGATGT GGGCACACTC CTTTTGGATC ACCTCCCGCT CCTGGGCCTG AGTCTTGGCC CCGCGAATCT CTTCGATGAG 002720 002721 GTCCTGAAGC TTCAGCGAAG GCACCACCAT CCTGACTGGC AGAGTCCGGG AGTGGAGAAA CACTCTCTGG TCGGGCGTGC 002800 002801 CTGGGCTTTC GGCCCAGGCC CGTCCTGTGT CAAGACCCTA AGAGCCCGGG TCCCACAGGC AGCGGCAGCG GCAGCGACAG 002880 002881 CCTGCCTACC CCAGGACTCC AGCCTCACCT GGCTTCTGCC TCAACTCCGC TCCTCTGCCC CCCAGCGCTT CCTGGTACGG 002960 002961 GGCCGAGCAG GGGTTGGTGC TCCGTGCGGT CCTTCCCTCT CCCCGCCTCC ACCACGGGAC CCCGCCCTCC TGGGCCGACT 003040 003041 GCAGAGCCTT CCTGAATCCT CTGACCTCGG GCCTCAGGCT TTAGCGGAGA GACAGCATGA TAGGCCTGGA GTTCTTCAAG 003120 003121 AGGCCTCCTC GCACATCCTT ACCACCCGGA GAGCCTCAGT TTGGATTTGA AGCCATCGCA CCCCAAAGGA GATGACAATC 003200 003201 CCCCCCCTTT TTTGAACTTT TTTATTAATA TATTTTTTTT GTT |
Predicted Small Protein
Name | ENST00000555968.1_smProtein_1634:1891 |
Length | 86 |
Molecular weight | 9022.1142 |
Aromaticity | 0.0705882352941 |
Instability index | 89.5011764706 |
Isoelectric point | 8.91387939453 |
Runs | 11 |
Runs residual | 0.00713012477718 |
Runs probability | 0.0479516950106 |
Amino acid sequence | MDPCIYYYIARSRQCAGARARSPAISPSCARRDWAAGAVSPPLGPGLGTSQQSPWCSKCT RPGLVLAESPGSGHCRVWEDGQSNL |
Secondary structure | LLLEEEEEEELLHHHLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLL LLLEEEEELLLLLEEEEEELLLLLL |
PRMN | - |
PiMo | - |