ENST00000556120.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000556120.1

Source

Gencode19

Same with

lnc-HSP90AA1-9:12,NONHSAT040029

Classification

intergenic

Length

2473 nt

Genomic location

chr14-:102018560..102022013

Exon number

2

Exons

102018560..102020579,102021561..102022013

Genome context

Sequence
000001 AGTGGATTTC AGGATTCCTC TAAGAAGCTT TGGAATGCCA GAAGATACCA CAAGTGAGAA GAAAAAATAA AACAAGAGGA 000080
000081 AGGATATACT TCCCATAAGG GGACAAAGTA CAGCCGCAGT GTCCTCCGCT TGGGCCATGG AACAGCTGCA GGTTTTGCCC 000160
000161 TGATTACCCT GGTGGTAAAG TCTGATTGGC TATGATTCCC GGTGTCCAGA AGATAAACAC GGGCGGTGCA GCGGAGCCAC 000240
000241 ACGCATGCCT GTGCATGGCC ACGCCAGGTC GGAAACCCAG CCCCTCTGCT TGGGAGGCAC GCAGGGCTCT GGCTGAAGCC 000320
000321 TGAAGCTTGG GATCCTCAGA GCACAGATGT CCCAGGGTTG TGTGAAGTTA GTGAGACGAG GTGTACGGAG AGAGCTCGGA 000400
000401 GAGGAGAGGG AGTCTCGATT GCTGTGGCTG TGGCTCGGAG ATGCCTGCAA GAGGGTTGCA CATGGCAGAA ACTTAATCCA 000480
000481 CACCAACTTC AGCGAAGAAG GAATGTACTG GCTCCAGTCA GTGAAAAGTC CAGGAGGAGC CATGCCTTCA GGCACGGCTG 000560
000561 CATCCAGGCA CTCAACAGGT GTATCCAGGC ACTCAACAGG TGCAGCCAAC ACCTTGCCCC GCAGGCTGTC AGCTCCTGCC 000640
000641 TTCTGCTGCG TCCACGTCAC TGTAGGTGGA TTTCTCTGCA CATGGGTGAG ATGGCCCCAG AAGCTCTGGC TCATGGAGTC 000720
000721 CTTGTAGCAC CTGTCCTGGC CATCCCCAGA TGAGAAAGCA TCATTTCCCA TGGCAGAAAT CTGGTGGAAA CAGGAGGGAG 000800
000801 GGGGTCGGCT CTCTTTGGTC GGATCTGGGT CTCGTGCCCA TCTCTGGGAG AGAAAAGTCC CCATTCACAG AAACTGAGCA 000880
000881 GATCCTGGAT TGGATGGGGA AGGAGAGATG CTGGCAGATA CACACACATT CACTGCACTC CCTGCAAGGA TAGTGACAAT 000960
000961 AGTAGAAGCT GCTCTTTCTT GAGAAGTTAT GACGTGTGCC AGAAAATTCT ACCTTTTAAG GATATAGAGA GGCTTTTATC 001040
001041 ATCCCCATTT TACAGATGAC AAAACTGAGG CTCAGAGAGG TGAAGTGATT TGCCTATGGA TGCATAGCTA AGGTCTGACC 001120
001121 CCACAACTCA CACTCACAAG TTAGCAAGAG GTGTTTCACC AGGGTAGTCT GGGGGCAGAA GGAGCCTGCC TGGTGAGGGA 001200
001201 AGGGAGGTGG AGAGGTGGGG AGAGGGGAGG CCAAGAGGAG GGGACACCAG GACCTGGCCT CTGGCTTGCA CAATGGGGAG 001280
001281 GGAACCCTGG AGAAGAGGAG GTTTATGGGG GAGGCTGCTG AGTTTTTTGG GCACATATGC TAAGTTGGAG GTGCCCATGG 001360
001361 TCCTCAGGAG ATGTTCGGGA TTTGGGGGTC AGAGGCATGA GCCTCGGCAT CCTGGGAATC ATGGCTGTTT GCTTTGCTTT 001440
001441 GGGAATTTCA CAGTGGTGGG GGGAAGGCGG CTGCTGACAG GAAGCACTTC CCATTTGGTG GAGAAGGCAG CCAGAACCTG 001520
001521 CATGGCAGAA GCTGCGGCCT GGGCCTGTGA CAGTGTCTAC AACTGTGGCC ACAGGTTCAA GGCCCTTGTA GTTGGCAGAC 001600
001601 ACAGGGCCTG AAGTTCTCTG GCCGTTGTTT TAGGGCAAAC ACCTTGAGAA TGGCATTTCC AAGGCCCTTG GGCTGTGCCA 001680
001681 GGGCACCAAC GCCAGTCGAG GACCACGCCT TTCTGAGGGA TGCTTGGAAT CTCACAGACA GGGGTTCACA TTCCGACTCT 001760
001761 GCTTCCTAGA GGCTATGTGG CCTTGGGCGT GTCTGGAACC TCTCTGGGCC ACAGTTTGCT TATCTGTGAA AGAGTCATGG 001840
001841 TAGCCTCTCC TTATGGGTTT ATGGGGAGCT TCGGATATGG AGGGTGGGGC AGCACACAGG GCTCAAGCTG CAGCTCTTAG 001920
001921 TTACCTGCTT TTCCTTTGCA GGTGTCCTAC GGGCCTGATG GAAAGGTGGC AGGCGAAATG CACCTGGCCT CAGCGTCAGG 002000
002001 GGCTGTGAAT GCAGTAGCAC TTGTAGCTAT GAGGTCAGAG TGGACTAGGA TGGTCCTTCC ACCAAGAAGC CTGGGCCTTC 002080
002081 CTGCTCTTCG TTGTCCAGCT GCAGAAACTG ATCTCATCCC TCAGGGCTTG GCACAACTGC CCCTTCCTCC TCACATTCCC 002160
002161 AAATATACCT ACCCCTCCCC AACTCAATCC TCCTCACCAG ACTGTGGCTC CAGGATGACA GGGCAGAGTT GGACTCACCT 002240
002241 GTGTCTGCCA GGCCAGCTCA CCGTGGGGGC AGGTCCCAAG AGGCCTCTGG ATTTGGACCA ACTTCCAGTG TGACCTTGAA 002320
002321 CAAGGCCTTC GCCTCCCTCA GCCTCCGTTG CATGAGGGGT TGTGCTGGCA CATCTCAGAG CAGGTAGCGC TACCTGGTGA 002400
002401 GTTGAGGGCT CTGTCCATCA TCTTTGTCAC TGTAATGCTG GGTAACAAAT AAACACGAAA CAATGAGTGC TCG
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Predicted Small Protein

Name ENST00000556120.1_smProtein_749:952
Length 68
Molecular weight 7781.705
Aromaticity 0.089552238806
Instability index 56.2029850746
Isoelectric point 9.10064697266
Runs 11
Runs residual 0.0208642650621
Runs probability 0.0451092804034
Amino acid sequence MRKHHFPWQKSGGNRREGVGSLWSDLGLVPISGREKSPFTETEQILDWMGKERCWQIHTH
SLHSLQG
Secondary structure LLLLLLLLLLLLLLLLLLLLEEELLLLEEELLLLLLLLLLHHHHHHHHHLLLLEEEEELE
EELLLLL
PRMN -
PiMo -