ENST00000558208.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000558208.1

Source

Gencode19

Same with

lnc-RP11-210M15.2.1-5:1

Classification

antisense

Length

2520 nt

Genomic location

chr15-:80846950..80855285

Exon number

3

Exons

80846950..80849274,80852397..80852508,80855203..80855285

Genome context

Sequence
000001 GGGAGAGCAG TTTTGCAATG GGAACTCCTC CGTCTACCTT CTGGTGAAAT GGGGTGCTGC ATCTGGGTCA TTCTGTAACC 000080
000081 ACGAAACACA AGATGAAATG CCATGGGGTT ACCAGGAGGG CGAGGAGAGA TGACCTGCAG TCAGGATCTG AAGACGGCTC 000160
000161 CTGGAGGGAA ATGGGGTTTG GAACACAGTT GGAAGGGCTG AAGCAAGATG TGAGAGCCCT GTGGAGAGAG GAGGTGTGTT 000240
000241 CTCTCTCTCA CCTCAGCTGA ACCTGGGCTC AGGAAGCTGA AACTCCTCCA TGTGAATCCT GGTTCTCTCA TTCATCACCT 000320
000321 GTGTGGCGGG ACGGTGCTTT TAGGTCACCA AGCCTCACTA CACTCACCTG TAACATGAAG ATGATGATGC CTACCTCCTC 000400
000401 CGACTACTGT GCAGATTTAA TAGTGCATGG GACAAGGCTT CCCATATGTT TGGCACACAG TAGGTGCTCG GTACACAGCA 000480
000481 GCTAACAGTC ACGATGTGCA TGACACTGTT ACTCAGGTGG CCACCCTCTT GGGCTCCCAG GTCATCCTAA ATCCCTCTCT 000560
000561 CTCTTCACCA TGTCTATCCA AAGCATCAGC ACTCATCAAA CAACTGTCTC CTCAAGTTGC CCCCTATTTC AAATTCCCAC 000640
000641 TGCTCCTGCC CATATTCTGG CCACATCACC TCTTACTTGG ACAATTTTAA AGCCTCTTGT CTTTGTTTCC AGTTATTTCC 000720
000721 TCCACCTGTC TCTTCTGCAA ACCTGGGCTA CTAAAGTGGT TTTTCAAAAC ACTGCTCTGC CTAAAATCCT CAAAGTCATC 000800
000801 CTCGCTTACC TTTATTTGTA TTTTATTTTT CTTTCTTTAT TTATTTGAGA CAGAGTCTTG CTCGTCGCCC AGGCTGGAGT 000880
000881 GCAATGGCAC GATCTTGGCT CACTGTAACC TCTGCCTCCC GGGTTCAAGC GATTCTCTTG CCTCAGCCTA CAGAGTAGCT 000960
000961 GGGATTACAG GCGCCCGCCC CCACACCCGG CTAATTTTTG TATTTTTAGT AGAGACAGGG TTTCACCATG TTGGCCAGGC 001040
001041 TGGTCTCGAA CTCCTGACCT CATGATCTGC CCACCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCGTGAG GCACCACACC 001120
001121 CGGTCTCTTA ACTTTGTATT GATTGAGTGA GTGAGTGAGT GAGTGAGACA GAGTCTCACT CTGTCGCCCA GACTGAAGTG 001200
001201 CAGTGGTGCA ATCTTCACTC ACTGCAACCT CTACCTCCCA GGTTCAAGCT ATTCCCCTGC CTGAGCCTCC CAACTAGCTG 001280
001281 GGTCTACAGG TGCGTGCCAC CATGCCTGGC TAATTTTTGT ATTTTTAGTA GAGGTTTTGC CACATTGGCC AGGCTGGTCT 001360
001361 CGAACTCCTG GCCTCAAGTG AACTGCCCAC CTTGGCCTCC CAAAGTGCTG GGATTACAGG CATGAGCCAC CACACCTGGC 001440
001441 CCTCACTTAC CTTTAAATGA CTGAGGAGAG AATCCATGTT CTTCAGCATG GGTTAAGAGG CCTTTCATAA CTTGGCTGTA 001520
001521 CCAGGCTCAT TCTATCACCA CTGCCCACCT CCTCCAAGTC AGCCAGTGTC ACTCCAGCCA CTAGGAACTG CTTAGGATTC 001600
001601 TCCCTTTTGC ATCTCTAGGG CTGCCCCTTC AGTCTAGAAT GTTCACTCAT TTATTCTATG CTCATCCTTT AAGACCCATC 001680
001681 CCAGTTATTC TCTCCCCTGG AACAATTCCT GCCTCTTCCC CATGCAGTTA ACCTCTCCAG CCTCTGTGCT CTGCAATGTT 001760
001761 TTTCTTCATG ACCCTTTAGA GTTCTCCTCC TATTACATAG TACTTATTTA CTGATGTGTG TCTGTCTTCC CTACTAGACT 001840
001841 GTGAGTGACT TCCTAGCAGG GGCCCTGAGT GAGGCCATAG GTAGGACCTT GCAGCCTGCC TGGCACATAG TAGGACTAAT 001920
001921 GTCCTGCCAG CCACATCCAC AGGTGCCCAG ACTATGCATC AGCTTTAAGT GGGTACTGGC AGTATGTACC TGCTGGAAGC 002000
002001 TCTCACGCAG ATGGCTTTGA TCCTCAGGGT GGCAGAATTC CAAAATGTCC TTTCCCAGAA GATCCTAAAT AAAAGAGACA 002080
002081 AGCTTTAATA ATCCCAGATC CATTTGTAAT TATTTGTATA CTCACTGTGA TACAACAGTG TTCATTTCCA TCTCCTTTAA 002160
002161 CTCATCTCCT TTAGCCTGTC CCACCCCAGA TTTTTTGAAA AAGTGAGTGC AAAATTTCCC TGGGAGCCGT CAGAGAACTG 002240
002241 GCTTCTTGGT ATTCACTCTA AGTTCTTCTG GCATGCTCAA TATCCATTTC TAATTTTGCT AAGGCACTAC ATCAGTAGCT 002320
002321 TCAGAATGCA ATTTTATTTT TGTTTGTCTT GGAGAGGCAA ACTGCAATAA ACATACTTTA ATAACATAAA AAGAAAGCAA 002400
002401 AATGATAGCC TGAGGACAGA TGTGTTGCTT ATGAAAACTG GAATTGTTTA AATGTGGAAA TTGTAGCTCT CCTGTGGCTG 002480
002481 AAAAAATGAG GTTATCATAA AATAACTGTA CTTGTTAAAA
[back to top]

Predicted Small Protein

Name ENST00000558208.1_smProtein_569:847
Length 93
Molecular weight 10388.313
Aromaticity 0.141304347826
Instability index 44.9836956522
Isoelectric point 9.58197021484
Runs 14
Runs residual 0.0169690334689
Runs probability 0.0195952254776
Amino acid sequence MSIQSISTHQTTVSSSCPLFQIPTAPAHILATSPLTWTILKPLVFVSSYFLHLSLLQTWA
TKVVFQNTALPKILKVILAYLYLYFIFLSLFI
Secondary structure LLEEEELLLEEEEELLLLLLLLLLLLHHHHLLLLLLHHHHLLLEEEHHHHHHHHHHHHHH
HHHHHHHLLHHHHHHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL
LLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLL
PiMo oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii
iiiiiiiTTTTTTTTTTTTTTTTTTTTTTooo