ENST00000558601.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000558601.1 |
Source |
Gencode19 |
Same with |
lnc-C15orf57-2:1,NONHSAT041847 |
Classification |
intronic(AS) |
Length |
584 nt |
Genomic location |
chr15-:40745643..40746838 |
Exon number |
3 |
Exons |
40745643..40745745,40746027..40746144,40746476..40746838 |
Genome context |
|
Sequence |
000001 AAAAGATGTC AAGAAAGCTC TCACTGGAGA AAACCAGTCT GATTGTCTCC AGCTCTGACA CAGCTGCCAG GAAGGATAGT 000080
000081 GGCTGGCTGG TGGACATCCA GGCCAAAGAC CCAGAGAACC ACAGGTTGAA TCCCAAATCC TCAGAAGTGT ACTCTAAAGA 000160 000161 CAGTAAACAG GCCACCTTCA CCTCAGGGGC ATCAGGATCT CAAAATCGAG GGGGAGGTCA GGCCCAGCTA AACTGTCATA 000240 000241 GTAGGGTCTG AGTGTAGTCA TCTCCACAGA AGCAGAAAGG GACAGACAGA TGCCCTGCTC TGGCCCTCAA GCTGCAGCAG 000320 000321 CACCATACAG CAACCCCACC AGCACAAGCA GAGCACAACC AAGGCTGGAG TGCAGTGGCG CAATCATGGA TCATGGTAGC 000400 000401 CTCGAACTCC CAGACTCAAG TGATCCTTCC ACCTCAGCCT CCCCAGTAAC TGAGACTATA AGCGCGTGAC ACCATGCCCA 000480 000481 GCTAAAACCA CAACTGGAGC TGAGTTAAGC ATTGTCCTCC TCTGCATTCT CTCTTGGAAT AACCCCTCCC ATCCATGAAA 000560 000561 GGAATAAAAC ACTTGTCATG AGCA |
Predicted Small Protein
Name | ENST00000558601.1_smProtein_5:250 |
Length | 82 |
Molecular weight | 8736.5252 |
Aromaticity | 0.037037037037 |
Instability index | 43.8617283951 |
Isoelectric point | 9.57720947266 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0478478478479 |
Amino acid sequence | MSRKLSLEKTSLIVSSSDTAARKDSGWLVDIQAKDPENHRLNPKSSEVYSKDSKQATFTS GASGSQNRGGGQAQLNCHSRV |
Secondary structure | LLLEEEEELEEEEEELLLHHHHLLLLLEEEEEELLLLLLLLLLLLLEEEELLLLEEEEEE LLLLLLLLLLLEEEEEELLLL |
PRMN | - |
PiMo | - |