ENST00000561496.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000561496.1 |
Source |
Gencode19 |
Same with |
lnc-GRIA1-1:1 |
Classification |
intergenic |
Length |
1765 nt |
Genomic location |
chr5+:153281019..153282783 |
Exon number |
1 |
Exons |
153281019..153282783 |
Genome context |
|
Sequence |
000001 ATCTCCTAGA ATCTTGGTGG GCCTGTGACT ACAAGGACCA GAAGAATATG GTAGAAGTGG TTTCAGTTCT GGAATCAACC 000080
000081 CTCAACCAGT CAGGTGGCTT CTGCTTCCTT TTTTGGACCA CTCAATTTTG CGATGCTCCC TCTGAGAAGC CAGCCAACAT 000160 000161 GCTGTGACAT GCACAACCAC ACGGAGAGAC CCTGTGGAGG CACTCTTGGC AACTGCCAGC TTCAACTGTC AGTCATGGGA 000240 000241 GGCAACCATC TTGGATGCCC AGCCCAGTGG AGCCTTCAGG TGACTGCATC CCAGCCACCA TCTGACTGCA ACCTCACCAG 000320 000321 CAAGCCCACA GGAGATCCAC CTAGCTGAGC CCAATCAACC CACAGAAACA TGAAAGAAGA TAAATTGCGG CTTTGAGTCA 000400 000401 CTGAAATTTG GGGACATTTA TTATGGAGCA ATAGATAACC AGATACCCCT CTTCTAATTT GTCATGTATG TGAACCAGAC 000480 000481 CAGACCTGGC CACTAAGTGA GTAACTGTCT CCATGAAGGA ACCATTAGAA ATGTCCTGCT TTTCTTTGGG TCTCCATTTT 000560 000561 CCCATCTGGG AAAAAAGAGG TAGGGCTAGA TCAGCAGTCA CAGTCTAGAG TCTATGATGG GTAGTCAATA GTTAGAAACA 000640 000641 ATATTTCTAA AAACCTGATG AAAGCCACAC ATTTACATGT GATGAAGCCA CTCTGGCTAA CTAAAAACCA AGTTTCCTTG 000720 000721 TTTTGGGTTG AAATTACATC AACTCCGTGT ATCAGCACTG TTCCTTCTGC TAGTCAGAAG CTGGTTAGCA GTCCCAGATG 000800 000801 GCTTTGATAG CTAAAAATGA AATAAAGAAT TAAATGCTGC TTAGTTCATG CAGTTTGTTC AGCATAGAAA AAAAAAATTT 000880 000881 TTTAACATGA GCTTCTCAGC TGAGAAAGGA ATCCTCAAGC AAAAAAAGAT GGTAATGCCT GGGAAACATG ACCTATAATA 000960 000961 ATGTTAATAG CTATCACATA CTGACCACTT ACTATCGACT AGGCCATATA CTGTGCTGAG TGAGTCACAA GTAGTGGCTC 001040 001041 ATCTGATCCT TCAAATAACC CATGAGGTGA ACACTATTTT TTTTTATTTG ACATAGAAAA ACTGAGGCAC AGAGAGGCAA 001120 001121 ACTACCATGT GTAAAGCTAT ACAACTAGGA AACAACGGAA ATGACAGAGC CAGGATTAAA ACCCATCAGA TTATAAAGCC 001200 001201 TACATAGTAC TACCTTTTAA AAGTATATAT TTGTATCTAA CTCAAATTAA ATGTCCCCTA AAATTGTTCC TTCCACCTTT 001280 001281 CCTCCTTATA AATAATATGT GTCGAGAAGA CTGTTGGCGT TTGAATAGTA GTCCAGGCCT TGGTCATGGC ATGAAGAAGT 001360 001361 GAGACTGTGT GTTTCACAGG ACTGGCCAAC ATCACTGGAG AATGAGCTCT CACACACTGC CTTATGGGGT ACAAATTGGT 001440 001441 AGCAACCCAT TAGAAACTTG TCTCAACATT TAATAACTTT GAAGATGTGA CTATACCATG TCCTAGCAAT CTCATTCTTA 001520 001521 GGTATATGCA CCAGAAAACC TGATGCACAT GTAGCAGTAC TTACGTGGAA GTTTATCACA GCATGTTGGT TATAGCAAAA 001600 001601 ACTCAGAAAC AACCTCAACA TCCATCAACA AGAAAATTAA AAGTAACTGC AAATTATTGT CATTCAAGGA ATTACCACAT 001680 001681 TTTAAAATGA ATCAACTAGA AATGTATGTT TCAACATGGA TGCATGTCAA AAACAATATT AAAAGAAAAA GGTAAATTGC 001760 001761 AAAAA |
Predicted Small Protein
Name | ENST00000561496.1_smProtein_47:166 |
Length | 40 |
Molecular weight | 4327.9276 |
Aromaticity | 0.128205128205 |
Instability index | 42.2179487179 |
Isoelectric point | 4.00164794922 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0396573043632 |
Amino acid sequence | MVEVVSVLESTLNQSGGFCFLFWTTQFCDAPSEKPANML |
Secondary structure | LEEEEEEHHHHLLLLLLEEEEEEEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |