ENST00000561496.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000561496.1

Source

Gencode19

Same with

lnc-GRIA1-1:1

Classification

intergenic

Length

1765 nt

Genomic location

chr5+:153281019..153282783

Exon number

1

Exons

153281019..153282783

Genome context

Sequence
000001 ATCTCCTAGA ATCTTGGTGG GCCTGTGACT ACAAGGACCA GAAGAATATG GTAGAAGTGG TTTCAGTTCT GGAATCAACC 000080
000081 CTCAACCAGT CAGGTGGCTT CTGCTTCCTT TTTTGGACCA CTCAATTTTG CGATGCTCCC TCTGAGAAGC CAGCCAACAT 000160
000161 GCTGTGACAT GCACAACCAC ACGGAGAGAC CCTGTGGAGG CACTCTTGGC AACTGCCAGC TTCAACTGTC AGTCATGGGA 000240
000241 GGCAACCATC TTGGATGCCC AGCCCAGTGG AGCCTTCAGG TGACTGCATC CCAGCCACCA TCTGACTGCA ACCTCACCAG 000320
000321 CAAGCCCACA GGAGATCCAC CTAGCTGAGC CCAATCAACC CACAGAAACA TGAAAGAAGA TAAATTGCGG CTTTGAGTCA 000400
000401 CTGAAATTTG GGGACATTTA TTATGGAGCA ATAGATAACC AGATACCCCT CTTCTAATTT GTCATGTATG TGAACCAGAC 000480
000481 CAGACCTGGC CACTAAGTGA GTAACTGTCT CCATGAAGGA ACCATTAGAA ATGTCCTGCT TTTCTTTGGG TCTCCATTTT 000560
000561 CCCATCTGGG AAAAAAGAGG TAGGGCTAGA TCAGCAGTCA CAGTCTAGAG TCTATGATGG GTAGTCAATA GTTAGAAACA 000640
000641 ATATTTCTAA AAACCTGATG AAAGCCACAC ATTTACATGT GATGAAGCCA CTCTGGCTAA CTAAAAACCA AGTTTCCTTG 000720
000721 TTTTGGGTTG AAATTACATC AACTCCGTGT ATCAGCACTG TTCCTTCTGC TAGTCAGAAG CTGGTTAGCA GTCCCAGATG 000800
000801 GCTTTGATAG CTAAAAATGA AATAAAGAAT TAAATGCTGC TTAGTTCATG CAGTTTGTTC AGCATAGAAA AAAAAAATTT 000880
000881 TTTAACATGA GCTTCTCAGC TGAGAAAGGA ATCCTCAAGC AAAAAAAGAT GGTAATGCCT GGGAAACATG ACCTATAATA 000960
000961 ATGTTAATAG CTATCACATA CTGACCACTT ACTATCGACT AGGCCATATA CTGTGCTGAG TGAGTCACAA GTAGTGGCTC 001040
001041 ATCTGATCCT TCAAATAACC CATGAGGTGA ACACTATTTT TTTTTATTTG ACATAGAAAA ACTGAGGCAC AGAGAGGCAA 001120
001121 ACTACCATGT GTAAAGCTAT ACAACTAGGA AACAACGGAA ATGACAGAGC CAGGATTAAA ACCCATCAGA TTATAAAGCC 001200
001201 TACATAGTAC TACCTTTTAA AAGTATATAT TTGTATCTAA CTCAAATTAA ATGTCCCCTA AAATTGTTCC TTCCACCTTT 001280
001281 CCTCCTTATA AATAATATGT GTCGAGAAGA CTGTTGGCGT TTGAATAGTA GTCCAGGCCT TGGTCATGGC ATGAAGAAGT 001360
001361 GAGACTGTGT GTTTCACAGG ACTGGCCAAC ATCACTGGAG AATGAGCTCT CACACACTGC CTTATGGGGT ACAAATTGGT 001440
001441 AGCAACCCAT TAGAAACTTG TCTCAACATT TAATAACTTT GAAGATGTGA CTATACCATG TCCTAGCAAT CTCATTCTTA 001520
001521 GGTATATGCA CCAGAAAACC TGATGCACAT GTAGCAGTAC TTACGTGGAA GTTTATCACA GCATGTTGGT TATAGCAAAA 001600
001601 ACTCAGAAAC AACCTCAACA TCCATCAACA AGAAAATTAA AAGTAACTGC AAATTATTGT CATTCAAGGA ATTACCACAT 001680
001681 TTTAAAATGA ATCAACTAGA AATGTATGTT TCAACATGGA TGCATGTCAA AAACAATATT AAAAGAAAAA GGTAAATTGC 001760
001761 AAAAA
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Predicted Small Protein

Name ENST00000561496.1_smProtein_47:166
Length 40
Molecular weight 4327.9276
Aromaticity 0.128205128205
Instability index 42.2179487179
Isoelectric point 4.00164794922
Runs 6
Runs residual 0.0148944193062
Runs probability 0.0396573043632
Amino acid sequence MVEVVSVLESTLNQSGGFCFLFWTTQFCDAPSEKPANML
Secondary structure LEEEEEEHHHHLLLLLLEEEEEEEEEEEELLLLLLLLLL
PRMN -
PiMo -