ENST00000568144.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000568144.1 |
Source |
Gencode19 |
Same with |
lnc-RSL1D1-2:1,NONHSAT140602 |
Classification |
intronic(S) |
Length |
1495 nt |
Genomic location |
chr16-:11974932..11976426 |
Exon number |
1 |
Exons |
11974932..11976426 |
Genome context |
|
Sequence |
000001 CTTGAGTCAT CAGTACCTTC AGATGGAGAT TTTGCTAGAT TTCAGTGAGA ATTTATTTAC CATGCTAACT CCAGGCAGAG 000080
000081 TAAATTAGAA AAAGAATCCA TTATCAAATG TAATATTTAG ACATAATTGG CACCTTACAA ATTGTATTAT CTGGTTTCTT 000160 000161 GATGCCTTGT GCATTGGAGA TGAGAATATA TAGTATCTTC TAAAATGTTT ACATTTTAAA GCCTACTTTT TCCTATTATC 000240 000241 TTTGCAACTT GGAGGCTAAC ATATGAGTGA AAATAATTCT CAGGTTGAGT TCTTAGTTAG TTGTTGCTGC TGTTGTTGTT 000320 000321 TTGAGATGGA GTCTCACCCT GTCGCCAGGC TGGAGTGCAG TGGCACATTC TTGGCTCACT GCAACCTCCG CCTCCCGGGT 000400 000401 AGCTGGGATT ACAGGCATGC ATCACCATAT CTGGCTAATT TTTGTGGTTT TAGTAGAGAC AGGGTTTCAC CTTGTTGGCC 000480 000481 AGGCTGGTCT CGAACTCCTA ACCTCGTGAT TTGCCCGCCT GGGCCTCCCA AAGTGCTGGG ATTACAGGCT TGAGCCACCA 000560 000561 CACCCAGCCC TTACTTACTC AGTTTTGTCT GTAGAGTTGT CCCAAAAATT ATGGAGATGA GCCAGGCATG GTGGCTAACA 000640 000641 CCTAGCACTT TCGAAGTTTG AGGTGGACCG ATTGCTTGAG CCCAGGAGTT GGAGACCACA CTGGGCAACA TAGGGAGACC 000720 000721 CTGTCTCTGT GAAAAATAAA ATTAGCCACT TGTGGTGATA CGTGCCTGTG GTCGTAGCTA TTTGGGAGGT TGAGGCAGGA 000800 000801 GGATTGCTTG AGCCCAGGAA GTCAAGGTTG CTATGATTTA TGAGCTCTGA TCACACCACT GCACTCCAGG CTGGGCAACA 000880 000881 GAACGAGACC TTTACTAAAA AAAAAAAAAA AAAAGCTATG GAAGTGTAAG GCAGCTTGGT GGTTGCAAGG GGCTGAAGGA 000960 000961 GGGAAAGTAA GGAGTGACTG CTTAACGGGT GTAGGATTTC CTTTTTGGGA CAATGAAGTT TTAGAATTAG ATAGTGGTAT 001040 001041 TGATTGTACA ACATGGTGAA TACACTAGAT GGCACTGAAT TGCAAACTAA AATGGTTTAA AAGTTGAATG TTATTACTTA 001120 001121 TATTTTACCA GAATAGAAAA AAGTATGATT CTCTAAACAT AAGTGAAGTT AGTGCCCAGA CATATTTGCA AGTGAGGGGC 001200 001201 CTTAGTAACT AGTATAGAGA AAGTAGCTGT TCTCTGTGGA AGCTATCACT TGATACTAAT CACTAGGCAG GTATAGAATG 001280 001281 TCCTAGAGTT GAGCAAGCCT CAAAAACTCA CTTCAGTTTA GTCCTCCTGA ATCTCAGTGG AACAGAGCTA GAATAGTTTA 001360 001361 AAAGACATAG AGGCAGCTGG TGGGTGGGCC ATGCCTGTAA TCCCAGCACT TTGGGAGGCC AAGGTGGGTG GATCACGAGG 001440 001441 TCAGGAGTTC GAGACCAGCT TGGCCAACAT AGTGAAACCC CGTCTCTACT AAAAA |
Predicted Small Protein
Name | ENST00000568144.1_smProtein_416:508 |
Length | 31 |
Molecular weight | 3397.9849 |
Aromaticity | 0.1 |
Instability index | 41.86 |
Isoelectric point | 5.97003173828 |
Runs | 5 |
Runs residual | 0.0355855855856 |
Runs probability | 0.0360007065889 |
Amino acid sequence | MHHHIWLIFVVLVETGFHLVGQAGLELLTS |
Secondary structure | LLLEEEEEEEEEELLLLLLHHHHHHHHLLL |
PRMN | LHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | i????????????????????????????? |