ENST00000569215.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569215.1 |
Source |
Gencode19 |
Same with |
lnc-GRIN2A-2:1 |
Classification |
intergenic |
Length |
1313 nt |
Genomic location |
chr16-:10445297..10446609 |
Exon number |
1 |
Exons |
10445297..10446609 |
Genome context |
|
Sequence |
000001 GGCTGAAGCA GGAGAATCGC TTGAACCCGG GAAAGGGAGA TTGCAGTAAA CCAAGATCGT ACCACCACAC TCCAGCTTGG 000080
000081 ATGACAGAGC GAGACTCTGT CTCAAAAAAA AAAAAAAAAT TCATGTGACA ATTGTATGAT TCCACTTATA TGAGGTACTT 000160 000161 AGAATAGTTA AATTCACAGA GACAGAAAGT AGAACAGTGG TTATCAGAGG CCAAGGGGAT GGAGGAGCTG CTCACGGCGA 000240 000241 GTTATTGCTT CAAGGGTACA GAGTTTCAGT TTGGGATGAT AAAAAATTCT GGAGCTGGTT GGGAGTGATG ATTGCACAAC 000320 000321 AGTGTGAATG TACTTAATGC CACTGAACTG TACACCTAAA ATGGTTAAAC AGTAAATTTT ATGTCAAATA TATTTTACCA 000400 000401 TAATAACATT TTTAAAAATT GATGGGAAAT ATTATTTTGC AATGGAATAG TTGCAAGTTG TTTGTTAATT GTTCAAACCA 000480 000481 CCTTGGTACT TGCTCATTTG GTTGAGGGAG ATTAGAGGGA AGAAATTGCA AAAGATGTTT TGCTAGTGTG TACTACAAGA 000560 000561 TTTCAGATGA CTTGTTGCCT GGTATAGTAG CTGCACTTCT TTAAACTTTG CTATACTGTA TATACAGCCA GGAATGTTTT 000640 000641 TCTCAAGGAC ATGGCAGCTA CCTCTTTGAA ATAAAATCTT CAAGGGAGAT AGTTTTCCTA ACTCTTACTT TTGTGGGAGG 000720 000721 GTAGGAGTCT AACTTCAGTG GGTATCTTGC TCCAAGCTGC AAAACTGCCT CCTGTCTTAG AGATATGAAA CATCTGTTTC 000800 000801 TTCTTTGGAT AAAGCCAACT AGCAAACAAA GACCACCCCC AATTAACAGA TACATTTAAG ATGGACTATA TGTGATGAAT 000880 000881 GATGCTGTCA ACTCCTCTTA CTTGGGGACA AGTTATCATT TATCATAAGA ATATGTATGT CATAGATTGC ATCTGCTTGA 000960 000961 CATCACAAAA TATACCAGGA AAAAAGGGTG AAATGTATCC CTTTCTTGGT TGGGTGCGGT GGCTCATGCC TGTAATCCCA 001040 001041 GCACTTTGGG AGGCAAAGGT GGGTGGATCA CCTGAGCCCA GGAGTTCCAG ACCAGCCTGG GCAATATGGT GAGACCCCCC 001120 001121 ACCGTCTCTA CAAAAAATAC AAAAATTAGC TGGGTGTGAT GGCATGTCCC CTGCACTCCC AGCTCCTTGG GAGGCTGAGG 001200 001201 TAGGAGGATG GATTGAGCCT GAGAGGTCAA GACTGCGGTG AGCTATGTGA TTGTACCACT GCATTCCAGC CTGGGTGACA 001280 001281 GAGTGAGACC CTTTCTCAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | ENST00000569215.1_smProtein_878:1111 |
Length | 78 |
Molecular weight | 8848.4555 |
Aromaticity | 0.12987012987 |
Instability index | 72.8961038961 |
Isoelectric point | 9.13824462891 |
Runs | 9 |
Runs residual | 0.0191981931112 |
Runs probability | 0.0371940568019 |
Amino acid sequence | MMLSTPLTWGQVIIYHKNMYVIDCICLTSQNIPGKKGEMYPFLGWVRWLMPVIPALWEAK VGGSPEPRSSRPAWAIW |
Secondary structure | LLLLLLLLLLEEEEEELLLEEEEEEEELLLLLLLLLLLLLLLLHHHHHHHHLHHHHHHHH LLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |