ENST00000583343.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000583343.1 |
Source |
Gencode19 |
Same with |
lnc-C17orf48-2:2,NONHSAT145641 |
Classification |
antisense |
Length |
876 nt |
Genomic location |
chr17+:10633108..10672323 |
Exon number |
5 |
Exons |
10633108..10633217,10639922..10639955,10657546..10657679,10671182..10671361,10671906..10672323 |
Genome context |
|
Sequence |
000001 CCGCCAGCGC GAAGAAGGCG GCCATGAGTC CGTTGCAGGC CCGCCACAGC GCTGGCGCCA TGGCTCGGAG AACACGGCGC 000080
000081 GGGGCGGTGA GTCCTGCCAC GTGCGGGGCG CACCTGACAT ACCTGGATAT AAACAATATC CAAGGCCCCT AAGGTAAAAG 000160 000161 CCTTGCTCCA AGTCCCCTTC TGACTTCTAG TCACTTCCGT GCTGCCAGCA GAGGGCGTGG GATTCTTCCT GAGGAGCCTG 000240 000241 AGTCTCAGCT TTGCCAGGTC CTTGCTGTGT GACCTTGGCT CCTGTGGGGC TATTGCAGAG GAGAAACTTC TGGAACAGAG 000320 000321 AGCTCCTTGT CCAGGGATGC TGCATCTGGG TGAGCTGCTC CTTGGATATG GTGCAAGTGT GGCCAGGGTG TGGTGTGGAA 000400 000401 GGAGCAGAAG TCTTCAGGAC TGAATCTGGA TGGACCACTG TGACAGCTGT ATACCCAGAT TATATTTCCC AGAAAGTGCC 000480 000481 TGCAACAATA CTTCCAGTCC CATATGTGCT TCTAGAGCCG GTCACTCTCT CAGTTTAAAG GTGGAGTCTA TTTCCCTTCC 000560 000561 CCTTAAGACT GCCTCAGTGG TTAGACTATG GCAAGAAAGA TATCATGTGA CTTCCAAGAC AAATCCTAAA AGGCAACACA 000640 000641 GCTTCCACCT GGCTCTTTCT ATTTTGAGCC ACTTACCTAT GGAACACCAG CCACCATGTT GGAAGGAAGC CCAGGTGACA 000720 000721 TGGAGAAGCA TCTGTGAGTG CTCTGGCAGG CACGCCAGCT TGAATCTCAG CCATCAGCCA GCATCAACCA CCAGATGCGT 000800 000801 GAGAGAGAGC CTTCACATGA CTTCAGGCCT CAGCCTGCAA GCTGTCCCAG CTTATGCTGA GTGAGCACAG ACAACC |
Predicted Small Protein
Name | ENST00000583343.1_smProtein_23:151 |
Length | 43 |
Molecular weight | 4448.0402 |
Aromaticity | 0.0238095238095 |
Instability index | 88.65 |
Isoelectric point | 11.4196166992 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0454614278143 |
Amino acid sequence | MSPLQARHSAGAMARRTRRGAVSPATCGAHLTYLDINNIQGP |
Secondary structure | LLHHHHLLLHHHHHHHHHLLLLLLLLLLLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |