ENST00000585065.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000585065.1 |
Source |
Gencode19 |
Same with |
lnc-VEZF1-1:1,NONHSAT054916 |
Classification |
intergenic |
Length |
4722 nt |
Genomic location |
chr17-:56066405..56072211 |
Exon number |
2 |
Exons |
56066405..56067157,56068243..56072211 |
Genome context |
|
Sequence |
000001 CTCATGCTTC CATAATAGTT CTGGGATAAT TCTAAACACA AGCCATTTTT CTAAGGAGAG TCCACATTAG AGAGGTCTTT 000080
000081 GTTTTGTATT CAAGATGATT AAAATTATGA ACTGGGAAGT TAGTCCCTGG GGTGTCCTGG CTGGCCTTTG GAAATCTTCA 000160 000161 CTACATCTTT CTGGGTTGGA ATTCTCACCA CAGCCTGAAC GTGGGGCTGT ATCTGAGCTG TCTCTGAGTG CTGTCCATTT 000240 000241 GATATATCGA GTACTGGGTG TTTACCAGGG CTCTTCAAGC CACTGGGAGA AACAGCTAAA GAGTAACCTA CTGATTTGAG 000320 000321 ATGTGGATTT GTGCCCCATC CCTTTCTCCT TGTTTCCCAC AGGAGTTTTA TCTCAAACTC CTAAGCCATT TTTAAGGAGA 000400 000401 TCACTGGAAC AAACTCCAAA CCTACCCTCT AATAGTCAAG TTTACCTGAA TTTTCTCAGT TCTCTCGGGA GAAGACTAAT 000480 000481 CACACATTGT AGTACCAACT TGGACTCTTC ATGTGCTTTT CTTAACTGAT TAGAGTTAAC ACCTCAGCTA AAGTGTATAG 000560 000561 AACATACATG GGGCTTCATC AGGCTTCAGA ATCAGTTTCA CTAGATGTGC TATGTAGGAG GCCACGGAAA AATTACTGTA 000640 000641 GTAGTAAAAG TTATCAGTTC TGATGTAAAC AATCATTTTG TCCCATATTA TAAATAAATT GGCCTGAAAA TATCTTTTCA 000720 000721 TATGTGAGGA ATAAGTATAT GATGCCTTTC TCCTTTAAAG TATGAACTGC TAAAAGACAG GGATAACGTG TATTCTGTAT 000800 000801 TCCAGCAGCC ACAGTGTGTT TCTGGTCTTT GTACCAGGTG CTCAGGAAGT GTTTTCACTG GCTTGGGTTG ACTACTTGCC 000880 000881 ATCTGCTCTC TGAGCATTCA TTTCTGAATG AAAGGGGAGA AAGTGAAAGG AGAGGTGGGA AGAAAGAGGA AGCTGCAGAA 000960 000961 ATACGAGGAA ACAGCTGGAG GAGGGAGGTG AAGTTGAGGA GGTAAGGTCA GTAAAACAAA AAGCTAGCAG AGGGCAGGGT 001040 001041 CAGGCCCTTG GGGTAGAGGG CTAATTAACT TCTGTCAGCT AGTTGAATAG AGCCTTGTGT GCTTTGTTAG AGACCAAAGG 001120 001121 TACTTCAAAG GAAAAAAATC TAGATTCTTC CCTGTGTACC TTAATAATTG TTCATCAGGT CAAAATCTAT CCTGTCCTCT 001200 001201 AGGAATTCTG GTCTTCCCTC AGGCCTAGCA GAGAGCTTTC TGCCACTACT CAGGCAACCA AGGGTGAAGT GCTTCAAGTA 001280 001281 GTATTTGTGG ACAGCAGCAG GTAAGCTTGA TGTGTTATTC ACAGCTTAAA GAGTAGATGC TGAGTACAGC TGTTGTCCAT 001360 001361 GTGTAGAGCT TTTAATAACC AGCGCAGCAG GCCCCTTCAC CTGCTTTTAT GCCTGGACCA GATGACTGAA TGTAGAACTT 001440 001441 TAGGCACTTT TTTTTTTTTT TGAGACGGAG TCTCGGTTTG TTGCCCAGGC TGGAGTGCAG TGGCGCAATC TCGGCTCACT 001520 001521 GCAAGCTCTG CCCCCCGGGT TCACGCCATT CTCTTGCCTC AGCCTCCCAA GTAGCTGGGA CTACAGACTC CCACCACCAT 001600 001601 GCCCGGCTAA TTTTTATATT TTTTAGTAGA GACAGGGTTT CACCGTGTTA GCCAGGATGG TCTCAATCTC CTGACCTGGT 001680 001681 GATCCACCTG CCTTGGCCTC CCAAAGTGCT GGGATTACAG GTGTGAGCCA CCAGATCGGC CCTTTAGGCA CTTTCTACTT 001760 001761 CTCAAGGTCA AGAAACATCC TTTAAAAAGT TAATTCCCTT TTCTGGAGCC TAAGCCAGAT CTTATCTAGG CCTTGTGTTG 001840 001841 CCATCTGTTA GCATTGATTT CTGGAATGGA GCAGCTTTCT CAAAGTTTGG TCTTGCTAGT CATGAGGTCA TGTCAGTGTC 001920 001921 TTAGGTCACT GCTGCTCACC TTCCTTACCC AGGGAGTATA CTGCATAGGT TTCTGAACAC CTGTTTTCAT TATTCACTGT 002000 002001 TCCTCTCACT GCCAAGAATG GAGGGACCCT CAGTTGAAGA TCAAATTGAC TCTGAAGAAA AACTGGAGAT GTTTCTCTTG 002080 002081 GAGTTTGGAT AGAGTATTCA CTTGATAACA TGTTTTTCCC CTGCCTTGCT CTTCACAAGA ACATCTGGCC AGGCATTAAC 002160 002161 AATTAGTAAA TTTTTTTGCA TATGAACAGT ATTTTTCTGG TCATGTAGAT GGGTGCACAT GACACTAAAC AGCATTGTTT 002240 002241 AGTGTTATCC CTCTTAACTG GTGGGTTGTA TTTGGGGTGG AGGCTGTAGC CGAGGAGAAG ACATTCACCT CTGTACTCGA 002320 002321 GAAACTTTGT GTAGGAATTT AGTTTATTTT TTTATTTTTT TTAATTTTTT ATTTTTTACT ACTTTTACTG TTAGCACAAT 002400 002401 GCTATAATTG AGCTAATCTT TGTAGTTTGG TGCAGGACCA CCAAGTTTGT GTGACCCATT ACCTACTTTT TCCATGCTCA 002480 002481 GCCATTACCC TGTCCTGGGG CATCTGAGGG CAGTAAGGAA CAGGTGTCCA AAGGAGGAAT GTTGGTGCCT ATGAGTATGT 002560 002561 TTTCCAGTTG TATTGAATTT CTTACTTGGT GTATTTTTGA CTTGTCTTAG TTTCTTTCCT TGTGGTCTAT GCTATTTTAC 002640 002641 TTGCGATTTG TTGGATATTC TCCCTGTCAT TAAAGAGTTG TAAAATGGAA GTTAGTTTCT CTATGCAAAT GCTTTAATGG 002720 002721 ATGAAGCTGA TAGGTTTAGC ATTGATTTTT GCTGGTGTCC TTCAACAAGC ATGAAGGTGA TAAATGTGTT TCCATGGCTT 002800 002801 TAGACTCATT TTTGAAGTCT TGGATTGTGT GAACATTCTT AGAAACAATA AAATGTTTTA ATTAAAAGCC CTCGACTACC 002880 002881 AGCTGAATTC AGTGTCTACT AGGAAAATGG GTAGATTTGT TACATTGTCC CTTTGCTCTC TATGACTTTG TTCCAGTTGT 002960 002961 CAAGGAACTT AAATGGGTAT TCAGGAAAAA GAATTCTTGT TTCCCTTTCC TCACCTTGCC AGTTAAATAA CTCCTGGTGA 003040 003041 CACTTCAGGT GGTAGAATTG AAACACAAAC CTGACTTCTG ACCACATGGG TCAAAGGCAA AAGGCAAATG GCTTCAAAGC 003120 003121 CCTTAGTGTG CTTATCCAGT TCAGGCAGTG AGGAGATAAC CTCTGCTTTC CTCCCTGAGG AGTTTGGAGT ATTTAAGGGG 003200 003201 GGATGGGGGG GGTGTCACTT TGAAAATATG TTGCTTTTTC TCCTGATTGT ATTGAGGCTG ATATGGAAGG GTTATTTCTT 003280 003281 TCTGGCCAAT ACTTTTTGGT ATTTCTAAAT ATTGCAATCT TGATTTTTAC TATTAAATTT GTTAATTGTC AGTTCTGGCT 003360 003361 TTTTTGCATA AAGAGTTGGT CCATTAACTT GCCAATTTGA AGCTTCTAAC TAGATATTCC CTACTGAAAG TTTTGGATTT 003440 003441 GTTTTTAGTT TGTGGAGCAG TCTTAGCTGG GGACAGGTAA TTGACAACGG CAGAGATACT TTCTTTTCCT AGGATTCTAA 003520 003521 GTCTGTAATC CACATCCTCA ATGTATTCAC AGGACTTTAA AATTCTCTCC AAATGAGGAA GGAAATATCC TGTTGCTTTC 003600 003601 TAATGTTTAC TAAAAGTTGT GTTTAGAACA ACAGATTTTA ATAGGCATCT TCCTTTGTTA TGTGTCATTA GCCCTTTGCC 003680 003681 CGTTTACCTT AGGGCTCTTT GAAGGAGAAA TGGATGGGAG AAAACCTGTC ACTTGGCGAA AGTAAAAGGG ATAATTAACT 003760 003761 GGCTCAGAGC TTATGTGCAG AGTTCCAAGC CCCAAAGTTA ATCTAGAACC ACTCGATAAC ACCAATAAAA ATATTTATTT 003840 003841 CACATCTGTT ATATATCTGG AAAATGTTCT AAGCATCTTA CACATATTTC TCATTAAATC CACAGGTGAC CATTGTGAGG 003920 003921 TAGATATTTT GTTCTAATTT TCCAGATGAG GAAGCTGAGA CCCTAAAAGG CTGACCGGTT CCCTGATGTG TTACCTGCTT 004000 004001 CTGCTACTGA TCCAAACTGC AGAACTTCTC ATTCATCCCC AAGGCCTCCA GGCAGTATCC AATGGGGAAT CAGCTCTAAA 004080 004081 AGGAACCAGA CCAACGTTTT CCAGCCCCTT CATTCTGGTG ACTGAGGGGA GGAAAGAATG GGAGGGGGTA TTCTTGTCTA 004160 004161 GTGGATGGAA AGGAAACACA CTGTCAAATT ACTATATCTC CTTGGTTTTC TATTACAGTA GAATTCTCCA GCCATATTTT 004240 004241 TATTGTCTAT GGGGGAAGTT GGAGATGGTG ACCTTGATTA GAAGTGTCTG GAGGGGGATA AATGGAGGGG ATAAGATTCA 004320 004321 GTTGGTTTTG GAAAATGTTA AAGTCTTAAA ATAATGCGTC CATCTGAAGA ATTTTTTCTA AAACCAGAGT TTATAAAAAT 004400 004401 ATCACTGATA CAGCCTGCCC CCTCATTTCC CTGCCACAGG AGATGTCTTG GACTAGAGAC ACTTGTTTAA TAATAGCTTG 004480 004481 TCTCTGATAT TCCCAGTAGC TTCCCTCTGT GTGAGGAAAG GATAGAAATG TTCAGGACAT CATCATACAG GCTCCTCATC 004560 004561 TACAAAGTTC CAGTAGCAGT GACGCCTACA CGGAAGACTT GGAACTGCAA ACAGGCTGGG GTCACCTCAG TGACATCTGA 004640 004641 CGCTGTCCAA CCAGAAGTTC GATTTTTGTT CTGGGGGTGA AGGAGGAAAC AGACTGTACT AAAGGACTAA AATAATTTGT 004720 004721 CT |
Predicted Small Protein
Name | ENST00000585065.1_smProtein_3107:3307 |
Length | 67 |
Molecular weight | 7547.7871 |
Aromaticity | 0.212121212121 |
Instability index | 44.0818181818 |
Isoelectric point | 5.60455322266 |
Runs | 10 |
Runs residual | 0.000907276356379 |
Runs probability | 0.0593976329271 |
Amino acid sequence | MASKPLVCLSSSGSEEITSAFLPEEFGVFKGGWGGCHFENMLLFLLIVLRLIWKGYFFLA NTFWYF |
Secondary structure | LLLLLEEEELLLLLHHHHHHLLLLLLLEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHH HHEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH HLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTT Tooooo |