ENST00000602640.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000602640.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1721 nt |
Genomic location |
chr1-:7753184..7754904 |
Exon number |
1 |
Exons |
7753184..7754904 |
Genome context |
|
Sequence |
000001 ATTGCAAGGT CCGATCCATT CCCATCAGTG TTGAGGAGAG GAAGAGAGGT CTTGTTGGAG AAGAGTAGCC ATCGAGGAGG 000080
000081 GGACAGTGGT GCTAGGGCTT CCTTCAGCCT CCCAGCCCCC AGCACAGGAG AGGGAGACAG CAGAGAGGGC CGGAGGGAGG 000160 000161 GAGCTGGTGG CTTAAAATGG AGCCGTTTAC AACCCCGCAC AGCAAATGGA GCCATTGGGA GGACACTTGA CCGAGAGGAG 000240 000241 AGCATTGCTT GAGCCAGGGG TGCCGTCTGC AGGACAGAGA CAGGAGGCAG TGTTGTTTCC AGGGCATCGT GGACCATGGC 000320 000321 ACAGGTGAGC AATTTAAAAA GGTGATTGGA ATCATATGTT AGAATAATGA CCTTAGCAGT CAAAGGCTCC TGGAATTTGT 000400 000401 CATTTAATTT CATATTTTAG GTGGACTGAT CTGTAATTTA GTTAATTTCA CATCTCCATC TAGGAAAACT GGAGCTCTGC 000480 000481 ACAATATTTT CTGCAGACGA CAAAGTATTC ACCCAAACTA TTTCTCATAG TAAAATGTGC TCTTTGTCCC CAGAGAACTG 000560 000561 CTGAATACTA CATAAGATCT GTGTAGGAGC CATGCTTTAA CAACAACAAA CACCTCAGAC ACACAACAAC CCTTTCCTCC 000640 000641 CTCGATAAAG ATACTGAAAA GAATCTGGTC TCTGGGGTGA GGAGTAGGGG AAGCAGGTGC AAGCAAGTGG GTGCAGAGGA 000720 000721 GTGGGAAGAT GGCATTTTGT GTAGGAAAGA ATTTAACGTT GCCCAAAGAG AGGTCTGGCT TTTGTCCTCA CCTTCTGGGA 000800 000801 GGTGAACTCT AAGCCCTTGG AATATCATGC CTGATTGGAG TTTGTTTGCC TGGGATCCTT GTGTCACAGA ATGGTCTAAC 000880 000881 CATATGATTT AGGGTAGATG CTGGCCACAC TGGATAGGTT TAGGGTAGGG GTTGGCTGTG CCAGAAAGAC CAACAATGTG 000960 000961 ACTTAGGGTG GGGTCTTTGG GTCACGTGGT ATCAGCTGAC TCTGGAGGAG CTGGAGAGGG AGGGCAGTCA CCTGTGTGAT 001040 001041 GGAGCCGCAA TAAAAACTCT GAACACTGGG GCTATGGTGA GCTGCCCTGG TTGGCAGTAC TCCATGGGTA CTGTCACACA 001120 001121 TCAATGCCAG GAAAGTCATG CTTTTCATGA TTCCATGGGG AAGAGGACAG TGGAAGCTCC ATGTCTGGTA CCTTCCTGGA 001200 001201 CTATGCCCTA TGCCCTTCCT CCCTTGGCTG ATTTTAATCT GTATCCTTTT GATGTAATAA TGTGCAACTG TGAGTATGAG 001280 001281 AGCTTTTGAT GAGTTCTGCG TCCTTCCAGT GAATGATCAA ACCTGAGGGT GGTCTAGGGT ACCCCTTGCA GTTGGTGCAG 001360 001361 CAATAAAGGT GGTCTTATGT GGATGGTGCT CCCTTTAACT TGACAGGTGG CTAACTGATA TGGTTGGCTG TGTCCCCACC 001440 001441 CAAATCTCAT CTTGAATTTC CATGTGTTGT GGGAGGGACC CAGTCGAAGA TAATTGAATC ATGGAGGCAA GTCTTTCCTG 001520 001521 TGTTGTTCTC ACGATAGTGA ATACATCTCA CGAGATCTGA TGGTTTTAAA AACAGGAGTT GCCCTGTAAG AGCTCTTTCT 001600 001601 CCCTTTGCCT GCTACCATCC ATGTAAGATG TGACTTGCTC CTCCTTGCCT TCCACCATGA TTGTGAAACT TCCCCAGCCA 001680 001681 CGTGGAACTG TAAGTCCAAT TAAACCCCTT TCTTTTGTAA A |
Predicted Small Protein
Name | ENST00000602640.1_smProtein_1073:1288 |
Length | 72 |
Molecular weight | 8097.1988 |
Aromaticity | 0.140845070423 |
Instability index | 52.6549295775 |
Isoelectric point | 4.67266845703 |
Runs | 13 |
Runs residual | 0.0345441067457 |
Runs probability | 0.024486024486 |
Amino acid sequence | MVSCPGWQYSMGTVTHQCQESHAFHDSMGKRTVEAPCLVPSWTMPYALPPLADFNLYPFD VIMCNCEYESF |
Secondary structure | LLLLLLLEEELLEEEELLLLLLHHHLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLL EEEELLEEELL |
PRMN | - |
PiMo | - |