ENST00000604215.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000604215.1

Source

Gencode19

Same with

NONHSAT075800

Classification

antisense

Length

520 nt

Genomic location

chr2+:179441830..179442349

Exon number

1

Exons

179441830..179442349

Genome context

Sequence
000001 CAAGTATATA GGACTTAATT GGTGAGCCGC CATCTTCCAA GGGAGGTGTC CATGTAAGTG TTGCTTTTTC AGCAGAAACA 000080
000081 TTACTGATTT CAACAGGACC TGGGGGACCA GGTACATCAA GGACTGTTAC CTTCACATGT TCCACCTTCG TGCCAAAAGG 000160
000161 ATTGGTAGCA GTGATGGTAT ATTCACCCGC ATCTTTTCTA GTGGCATACT TGATAGTAAG CATGGAAGAT GTTGGGGTTG 000240
000241 AAGTTATCTG AGTGATATCT GATGGTCTAA TGTCTTTTCC TGCCTTGGAC CAACTTGATT TTGGAAGGGG TTTGCCAAGA 000320
000321 ATGCTAATGG CATTCAAAAC AATGGTATCC CCTGCTTTAA TTGTTAGCCC ATCTTTTATT GTGGGATCAA GGACAATTGT 000400
000401 TGGTGCCTCT GCAAAGAAAA AAATACATTT TAATCAGAAA AGGAAGGAGG CTTAATTTGC TTTAAAAAAA AAAGTACATA 000480
000481 AAAAGTAAAA TGGACCTACC GTATTCATCC TTGCAAATAA
[back to top]

Predicted Small Protein

Name ENST00000604215.1_smProtein_269:454
Length 62
Molecular weight 6721.9814
Aromaticity 0.0819672131148
Instability index 40.7737704918
Isoelectric point 11.0969848633
Runs 15
Runs residual 0.0930846052384
Runs probability 0.0291114644056
Amino acid sequence MSFPALDQLDFGRGLPRMLMAFKTMVSPALIVSPSFIVGSRTIVGASAKKKIHFNQKRKE
A
Secondary structure LLLLLLLHHHHLLLHHHHHHHHHHLLLLLEEELLLEEELLLEEEELHHHEEEEHHHHLLL
L
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
L
PiMo oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii
i