LINC00471
Contents
Annotated Information
Approved Symbol
LINC00471
Approved Name
long intergenic non-protein coding RNA 471
Previous Symbols
C2orf52
Synonyms
MGC43122
Chromosome
2q37.1
RefSeq ID
NM_173513
OMIM ID
_
Ensembl ID
ENSG00000181798
pubmed IDs
12477932
Sequence
>gi|34222230|ref|NM_173513.2| Homo sapiens chromosome 2 open reading frame 52 (C2orf52), mRNA
000001 GAGGGCGTCA CCAGCGTGTC GGCGCCTGCG GTTTTCTTCG GGCTGTCCCC AGGCGTCGTG CCCGCGTCCG TCACGCGCGG 000080
000081 TGGCTTGCAG GGGCGCACCG CGACAGCCTT AAAGGAAAAC CTGTTAGGGA CAAGGGCTGC TGTGGGCAGC GAGGGTTATA 000160
000161 GACTCATGTG TGTTCTGAAT TCTGGTGGGG GTAGTGATGG ACGCTGACCC AGTTCACAGA ATTATCTGAC TGGCGAAGTA 000240
000241 AAGGTACTTG AATTGCAGGA AAAAAGGTCA AGGTGAACTG AAGAAAATAA GTCTTTCCCC AAAGGAGGTA GAAGATGGGG 000320
000321 AAGATGAGAT GTCAGAAGCT AAGGACAATG GCAGTAGAGA TGAGGTTCTT GTCCCTCATA AGAATTGCAG GAAGAATACC 000400
000401 ACTGTCCCGG GAAAGAAAGG GGAGGAAAAG TCTCTGGCTC CTGTGTTTGC TGAGAAGTTA ATATCACCAA GCAGGAGGGG 000480
000481 AGCCAAGCTC AAGGACCGTG AGAGCCACCA GGAGAATGAA GACAGGAACA GTGAGTTGGA CCAGGATGAG GAAGATAAAG 000560
000561 AATCCTTCTG TAGGGGGTTC CCGATGAGTG GCTGTGAGTT AGAGACAAGC TGCTGTGTGT GCCATTCTAC AGCACTTGGG 000640
000641 GAGAGGTTCT GTTAAAAATC CATCCCTCTG AAAACTGCCT TGGCAATTCC CGGCTGATTC TTCGGGATGG GCCTCATTGA 000720
000721 TGGGGAGTCT CAGTGGATGT TTGACTTTTG CTTTCTACCT GACCCTAGTC AGAGATTTTT TCTTTTTCCT TTTTTTTTTT 000800
000801 TTTTTTTTTT CTGAGACAGA GTCTTGCTCT GTCACCCAGG TTGGAGTGCA TTGGTGTGGT CTTGGCTCAC TGCAGCCTCT 000880
000881 GCCTCCTGAG TAGCTGGGAC TACAGGCGCA CACCACCACA CTGGCTAATT TTTGTATTTT TAGTAGAGAT GGGGTTTCGC 000960
000961 CATGTTGGCC AGGCCATCTT GAACTCCTGA CCTGAAGTGA CCTTCCCACC TTGGCCCCCC AAAGTGCTGG GATTACAGGC 001040
001041 ATGAGCCACC ATGCCTAGCC CAGAAATTTT CTCTTTGAAT ACTATACATT GATGAGTTCT GTCTTTATGC TTATGATCCA 001120
001121 CGCAGGTAGG TCGTCTCAGA TTTAATTTTC AGTGGTTTTT TTCTGTCTTG ATGGAGTCTG TGTAACATTT AAAATATTGC 001200
001201 TACCAAAGCA GTAATTCTTA CTATAGTTAT TAAAATGCAA GAACAATATA TTTAAAATTA TTTCATAATA AAGTTAAAAT 001280
001281 GAGAAAAAAA AAAAAAAAA
000081 TGGCTTGCAG GGGCGCACCG CGACAGCCTT AAAGGAAAAC CTGTTAGGGA CAAGGGCTGC TGTGGGCAGC GAGGGTTATA 000160
000161 GACTCATGTG TGTTCTGAAT TCTGGTGGGG GTAGTGATGG ACGCTGACCC AGTTCACAGA ATTATCTGAC TGGCGAAGTA 000240
000241 AAGGTACTTG AATTGCAGGA AAAAAGGTCA AGGTGAACTG AAGAAAATAA GTCTTTCCCC AAAGGAGGTA GAAGATGGGG 000320
000321 AAGATGAGAT GTCAGAAGCT AAGGACAATG GCAGTAGAGA TGAGGTTCTT GTCCCTCATA AGAATTGCAG GAAGAATACC 000400
000401 ACTGTCCCGG GAAAGAAAGG GGAGGAAAAG TCTCTGGCTC CTGTGTTTGC TGAGAAGTTA ATATCACCAA GCAGGAGGGG 000480
000481 AGCCAAGCTC AAGGACCGTG AGAGCCACCA GGAGAATGAA GACAGGAACA GTGAGTTGGA CCAGGATGAG GAAGATAAAG 000560
000561 AATCCTTCTG TAGGGGGTTC CCGATGAGTG GCTGTGAGTT AGAGACAAGC TGCTGTGTGT GCCATTCTAC AGCACTTGGG 000640
000641 GAGAGGTTCT GTTAAAAATC CATCCCTCTG AAAACTGCCT TGGCAATTCC CGGCTGATTC TTCGGGATGG GCCTCATTGA 000720
000721 TGGGGAGTCT CAGTGGATGT TTGACTTTTG CTTTCTACCT GACCCTAGTC AGAGATTTTT TCTTTTTCCT TTTTTTTTTT 000800
000801 TTTTTTTTTT CTGAGACAGA GTCTTGCTCT GTCACCCAGG TTGGAGTGCA TTGGTGTGGT CTTGGCTCAC TGCAGCCTCT 000880
000881 GCCTCCTGAG TAGCTGGGAC TACAGGCGCA CACCACCACA CTGGCTAATT TTTGTATTTT TAGTAGAGAT GGGGTTTCGC 000960
000961 CATGTTGGCC AGGCCATCTT GAACTCCTGA CCTGAAGTGA CCTTCCCACC TTGGCCCCCC AAAGTGCTGG GATTACAGGC 001040
001041 ATGAGCCACC ATGCCTAGCC CAGAAATTTT CTCTTTGAAT ACTATACATT GATGAGTTCT GTCTTTATGC TTATGATCCA 001120
001121 CGCAGGTAGG TCGTCTCAGA TTTAATTTTC AGTGGTTTTT TTCTGTCTTG ATGGAGTCTG TGTAACATTT AAAATATTGC 001200
001201 TACCAAAGCA GTAATTCTTA CTATAGTTAT TAAAATGCAA GAACAATATA TTTAAAATTA TTTCATAATA AAGTTAAAAT 001280
001281 GAGAAAAAAA AAAAAAAAA
Predicted Small Protein
Name | LINC00471_smProtein_719:892 |
Length | 57 |
Molecular weight | 6502.4657 |
Aromaticity | 0.245614035088 |
Instability index | 48.3966666667 |
Isoelectric point | 4.60174560547 |
Runs | 6 |
Runs residual | 0.0486842105263 |
Runs probability | 0.0511835364778 |
Amino acid sequence | MGSLSGCLTFAFYLTLVRDFFFFLFFFFFFSETESCSVTQVGVHWCGLGSLQPLPPE |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHEEEEELLLLEEEEEEEEEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii |