Lnc-SCYL1-1:5
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Contents
Annotated Information
Name
mascRNA: MALAT1-associated small cytoplasmic RNA
Characteristics
mascRNA is a conserved, 61 nucleotide, tRNA-like sequence at the 3' end of Malat1 that is cleaved off the full length transcript and processed to generate a short tRNA-like ncRNA.
Mature mascRNA undergoes a post-transcriptional CCA addition and folds into a tRNA like structure but could not be amino acylated.
Function
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Expression
mascRNA was cleaved off Malat1 in a wide variety of human tissues.
mascRNA is cleaved off Malat1 by RNaseP in the nucleus before further processing by RNaseZ and then exported to the cytoplasm.
Conservation
Conserved in mammals and back to reptiles and amphibians. More highly conserved than most of Malat1.
Misc
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Transcriptomic Nomeclature
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Regulation
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
lnc-SCYL1-1:5 |
| Source |
LNCipedia2.1 |
| Same with |
, |
| Classification |
intergenic |
| Length |
61 nt |
| Genomic location |
chr11+:65273587..65273645 |
| Exon number |
1 |
| Exons |
65273587..65273645 |
| Genome context |
|
| Sequence |
000001 GATGCTGGTG GTTGGCACTC CTGGTTTCCA GGACGGGGTT CAAATCCCTG CGGCGTCTCC A
|
