Lnc-SNAI1-1:1

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Annotated Information

Name

LOC100887755

Characteristics

Two exon, 600 nt transcript

Around 50 kb 3’ from SNAI1 on the opposite strand.

In-vitro translation showed no sign of protein product.

Function

LncRNA regulates gene expression through SNAI1 dependant and independent mechanisms.

Stimulates SNAI1 gene expression (in A549 cells) and like SNAI1 is required for cell migration.

Stimulates Aurora-kinase A (AURKA) expression, a gene found ~6 megabases from LOC100887755 on chr20. SNAI1 does not appear to regulate AURKA and so LOC100887755 appears to regulate AURKA by a SNAI1 independent mechanism.

Expression

Expressed in A549 cells.

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID	lnc-SNAI1-1:1
Source	LNCipedia2.1
Same with	,
Classification	intergenic
Length	600 nt
Genomic location	chr20+:48657243..48658166
Exon number	,
Exons	,
Genome context
Sequence	000001 CCGTTCCTGC CTCCCACAGA CACCTATTAA GTGCCTCCAG TTTTAGGAAC TGGGTATAGA TATGGCTGGG AACAAAATGG 000080 000081 AAGAAAACAA AAACAAAAAT CCCTGCCCTC ATGGTGCTGA CTCTCCTGTG GCAGAGACGG AGAAGATGAA CAGGGATTTT 000160 000161 ATACCAGGCG TCAGAAGGGA ACCAGTGCTA AAGAAAATGA AAACACCAGG CCGGGAGAGG CAGCTGGCAT GCGGGCCGTG 000240 000241 GTGGTTTTAC GTGGCCGATT TGAGAGAGTG AGACCCCTGG GGTCTTGGAG CCAGGCCTGG GAAAAGCTAC TTCACGTCAG 000320 000321 GCCAGGGGCT GTAGCCCTGG CAACCTCCAC TCCGCCTGGA AATCCTCCAC CTCGGGGCCT CTCTTTGCCC AGACCTGGCC 000400 000401 CAGGAGGAGC ACATGGGAGC CGGGACCTTC CCAACAATCC TTGCCGTTGG CTCCACAAAC CTCAGCCAGT CCTGCAACCT 000480 000481 GGGATGCCTT TTCCACCAGG ATGCCTGCTA CTGTCACTGT TGTCATTAGA TAATTAATGA ACTATAATTA GAAATCATAT 000560 000561 CAATAAAATT TCACAGTCTA AGGCTGTTGA AATAGGAAAA

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