NONHSAT000001
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000001 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1657 nt |
Genomic location |
chr1+:11869..14409 |
Exon number |
3 |
Exons |
11869..12227,12613..12721,13221..14409 |
Genome context |
|
Sequence |
000001 GTTAACTTGC CGTCAGCCTT TTCTTTGACC TCTTCTTTCT GTTCATGTGT ATTTGCTGTC TCTTAGCCCA GACTTCCCGT 000080
000081 GTCCTTTCCA CCGGGCCTTT GAGAGGTCAC AGGGTCTTGA TGCTGTGGTC TTCATCTGCA GGTGTCTGAC TTCCAGCAAC 000160 000161 TGCTGGCCTG TGCCAGGGTG CAAGCTGAGC ACTGGAGTGG AGTTTTCCTG TGGAGAGGAG CCATGCCTAG AGTGGGATGG 000240 000241 GCCATTGTTC ATCTTCTGGC CCCTGTTGTC TGCATGTAAC TTAATACCAC AACCAGGCAT AGGGGAAAGA TTGGAGGAAA 000320 000321 GATGAGTGAG AGCATCAACT TCTCTCACAA CCTAGGCCAG TGTGTGGTGA TGCCAGGCAT GCCCTTCCCC AGCATCAGGT 000400 000401 CTCCAGAGCT GCAGAAGACG ACGGCCGACT TGGATCACAC TCTTGTGAGT GTCCCCAGTG TTGCAGAGGC AGGGCCATCA 000480 000481 GGCACCAAAG GGATTCTGCC AGCATAGTGC TCCTGGACCA GTGATACACC CGGCACCCTG TCCTGGACAC GCTGTTGGCC 000560 000561 TGGATCTGAG CCCTGGTGGA GGTCAAAGCC ACCTTTGGTT CTGCCATTGC TGCTGTGTGG AAGTTCACTC CTGCCTTTTC 000640 000641 CTTTCCCTAG AGCCTCCACC ACCCCGAGAT CACATTTCTC ACTGCCTTTT GTCTGCCCAG TTTCACCAGA AGTAGGCCTC 000720 000721 TTCCTGACAG GCAGCTGCAC CACTGCCTGG CGCTGTGCCC TTCCTTTGCT CTGCCCGCTG GAGACGGTGT TTGTCATGGG 000800 000801 CCTGGTCTGC AGGGATCCTG CTACAAAGGT GAAACCCAGG AGAGTGTGGA GTCCAGAGTG TTGCCAGGAC CCAGGCACAG 000880 000881 GCATTAGTGC CCGTTGGAGA AAACAGGGGA ATCCCGAAGA AATGGTGGGT CCTGGCCATC CGTGAGATCT TCCCAGGGCA 000960 000961 GCTCCCCTCT GTGGAATCCA ATCTGTCTTC CATCCTGCGT GGCCGAGGGC CAGGCTTCTC ACTGGGCCTC TGCAGGAGGC 001040 001041 TGCCATTTGT CCTGCCCACC TTCTTAGAAG CGAGACGGAG CAGACCCATC TGCTACTGCC CTTTCTATAA TAACTAAAGT 001120 001121 TAGCTGCCCT GGACTATTCA CCCCCTAGTC TCAATTTAAG AAGATCCCCA TGGCCACAGG GCCCCTGCCT GGGGGCTTGT 001200 001201 CACCTCCCCC ACCTTCTTCC TGAGTCATTC CTGCAGCCTT GCTCCCTAAC CTGCCCCACA GCCTTGCCTG GATTTCTATC 001280 001281 TCCCTGGCTT GGTGCCAGTT CCTCCAAGTC GATGGCACCT CCCTCCCTCT CAACCACTTG AGCAAACTCC AAGACATCTT 001360 001361 CTACCCCAAC ACCAGCAATT GTGCCAAGGG CCATTAGGCT CTCAGCATGA CTATTTTTAG AGACCCCGTG TCTGTCACTG 001440 001441 AAACCTTTTT TGTGGGAGAC TATTCCTCCC ATCTGCAACA GCTGCCCCTG CTGACTGCCC TTCTCTCCTC CCTCTCATCC 001520 001521 CAGAGAAACA GGTCAGCTGG GAGCTTCTGC CCCCACTGCC TAGGGACCAA CAGGGGCAGG AGGCAGTCAC TGACCCCGAG 001600 001601 ACGTTTGCAT CCTGCACAGC TAGAGATCCT TTATTAAAAG CACACTGTTG GTTTCTG |
Predicted Small Protein
Name | NONHSAT000001_smProtein_1406:1636 |
Length | 77 |
Molecular weight | 8574.7069 |
Aromaticity | 0.0789473684211 |
Instability index | 71.325 |
Isoelectric point | 10.0609741211 |
Runs | 10 |
Runs residual | 0.00983061101028 |
Runs probability | 0.021489136195 |
Amino acid sequence | MTIFRDPVSVTETFFVGDYSSHLQQLPLLTALLSSLSSQRNRSAGSFCPHCLGTNRGRRQ SLTPRRLHPAQLEILY |
Secondary structure | LEEEELLLEEEEEEEEELLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLHHHEEEEL |
PRMN | - |
PiMo | - |