NONHSAT000003
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000003 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1483 nt |
Genomic location |
chr1+:11874..14409 |
Exon number |
4 |
Exons |
11874..12227,12595..12721,13403..13655,13661..14409 |
Genome context |
|
Sequence |
000001 CTTGCCGTCA GCCTTTTCTT TGACCTCTTC TTTCTGTTCA TGTGTATTTG CTGTCTCTTA GCCCAGACTT CCCGTGTCCT 000080
000081 TTCCACCGGG CCTTTGAGAG GTCACAGGGT CTTGATGCTG TGGTCTTCAT CTGCAGGTGT CTGACTTCCA GCAACTGCTG 000160 000161 GCCTGTGCCA GGGTGCAAGC TGAGCACTGG AGTGGAGTTT TCCTGTGGAG AGGAGCCATG CCTAGAGTGG GATGGGCCAT 000240 000241 TGTTCATCTT CTGGCCCCTG TTGTCTGCAT GTAACTTAAT ACCACAACCA GGCATAGGGG AAAGATTGGA GGAAAGATGA 000320 000321 GTGAGAGCAT CAACTTCTCT CACAACCTAG GCCAGCTCCT GTCTCCCCCC AGGTGTGTGG TGATGCCAGG CATGCCCTTC 000400 000401 CCCAGCATCA GGTCTCCAGA GCTGCAGAAG ACGACGGCCG ACTTGGATCA CACTCTTGTG AGTGTCCCCA GTGTTGCAGA 000480 000481 GAGCCTCCAC CACCCCGAGA TCACATTTCT CACTGCCTTT TGTCTGCCCA GTTTCACCAG AAGTAGGCCT CTTCCTGACA 000560 000561 GGCAGCTGCA CCACTGCCTG GCGCTGTGCC CTTCCTTTGC TCTGCCCGCT GGAGACGGTG TTTGTCATGG GCCTGGTCTG 000640 000641 CAGGGATCCT GCTACAAAGG TGAAACCCAG GAGAGTGTGG AGTCCAGAGT GTTGCCAGGA CCCAGGCACA GGCATTAGTG 000720 000721 CCCGTTGGAG AAAAGAATCC CGAAGAAATG GTGGGTCCTG GCCATCCGTG AGATCTTCCC AGGGCAGCTC CCCTCTGTGG 000800 000801 AATCCAATCT GTCTTCCATC CTGCGTGGCC GAGGGCCAGG CTTCTCACTG GGCCTCTGCA GGAGGCTGCC ATTTGTCCTG 000880 000881 CCCACCTTCT TAGAAGCGAG ACGGAGCAGA CCCATCTGCT ACTGCCCTTT CTATAATAAC TAAAGTTAGC TGCCCTGGAC 000960 000961 TATTCACCCC CTAGTCTCAA TTTAAGAAGA TCCCCATGGC CACAGGGCCC CTGCCTGGGG GCTTGTCACC TCCCCCACCT 001040 001041 TCTTCCTGAG TCATTCCTGC AGCCTTGCTC CCTAACCTGC CCCACAGCCT TGCCTGGATT TCTATCTCCC TGGCTTGGTG 001120 001121 CCAGTTCCTC CAAGTCGATG GCACCTCCCT CCCTCTCAAC CACTTGAGCA AACTCCAAGA CATCTTCTAC CCCAACACCA 001200 001201 GCAATTGTGC CAAGGGCCAT TAGGCTCTCA GCATGACTAT TTTTAGAGAC CCCGTGTCTG TCACTGAAAC CTTTTTTGTG 001280 001281 GGAGACTATT CCTCCCATCT GCAACAGCTG CCCCTGCTGA CTGCCCTTCT CTCCTCCCTC TCATCCCAGA GAAACAGGTC 001360 001361 AGCTGGGAGC TTCTGCCCCC ACTGCCTAGG GACCAACAGG GGCAGGAGGC AGTCACTGAC CCCGAGACGT TTGCATCCTG 001440 001441 CACAGCTAGA GATCCTTTAT TAAAAGCACA CTGTTGGTTT CTG |
Predicted Small Protein
Name | NONHSAT000003_smProtein_626:892 |
Length | 89 |
Molecular weight | 9447.6235 |
Aromaticity | 0.0568181818182 |
Instability index | 89.7318181818 |
Isoelectric point | 9.26275634766 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0136586165998 |
Amino acid sequence | MGLVCRDPATKVKPRRVWSPECCQDPGTGISARWRKESRRNGGSWPSVRSSQGSSPLWNP ICLPSCVAEGQASHWASAGGCHLSCPPS |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLEELLLLLLLLLLL LLLLHHHLLLLEEHHHLLLLEELLLLLL |
PRMN | - |
PiMo | - |