NONHSAT000163

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT000163

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6727 nt

Genomic location

chr1+:762971..794826

Exon number

7

Exons

762971..763155,764383..764484,783034..783186,787307..787490,788051..788146,788771..788809,788859..794826

Genome context

Sequence
000001 ccgggccggg ccggggcggg gtctcgggca ggggcggggA GCTTACCGAC CTCCCGCCCC CGCTGCGCGC GTTTCTGGCC 000080
000081 CTGCCAGTGT CTCCGCCGGT TGAAAGCGCG TGTCTGCGTC GGGTTCTGTT GGAGTGCGTT CGGTGCGCCG TGGGTCCGCG 000160
000161 CTGCTTCCAC CCAACTTCCT GTTAGtttct ctcctgtcac aatggcatga tctcggctca ctgcgacctc tgcttcctgg 000240
000241 gttcaaggat tctcctgcct cagcctccca agtagctggg attacagTTT CCATCATTAT CTTCTATGGA GTTCTTCATT 000320
000321 CCCACATCTG TGGACCTTAA AATCCTACCG TTGAGTGCCT GCCTTGGATC AGCAGTCAGT TCGTTACCTT GGTTCTCAGA 000400
000401 CGATGCTTGC AACAACGCCA TGCGATTCGC CCACTCTTGG GTTACATTAG TTATACACTC TGGAGGTGAC TTGACCTGTC 000480
000481 ATTGTGAACA ATTATTGCTC TTGGACGACC CAGGACATAG GCCAGCCAGT ACGTACCCCA GTGTGTTGGA GAATCGCGCT 000560
000561 CGGCTTCTTC CTCTGTGCTG AGTCATGAAA GTTGCCGGAG CAGGTGCAGT TACACAACCT CCAGGTATGA TCCTGTTTAA 000640
000641 GGACTGGATT TAGGATAACT ACTTAGAGGT TAAAAGTCAC AAGGGTGTAT GGATGAGGCT GGAGTGATCT GGGACCAAAG 000720
000721 acatctaggc ttgctgtcaa ggcttctgat caacatgagA TGACCGCCGT GTGGTAAACT GATGAACCCC GACCCTGATG 000800
000801 AACGTGAGAT GACCGCCGTG TGGTAAACTG ATGAACCCCG ACCCTGATGA ACGTGAGATG ACCGCCGTGT GGTAAACTGA 000880
000881 TGAACCCCGA CCCTGATGAA CGTGAGATGA CCGCCGTGTG GTAAACTGAT GAACCCCGAC CCTGATGAAC GTGAGATGAC 000960
000961 CGCCGTGTGG TAAACTGATG AACCCCGACC CTGATCAACG TGAGATGACC GCCGTGTGGT AAACTGATGA ACCCCGACCC 001040
001041 TGATGAACAT GAGATGACCG CCGTGTGGTA AACTGATGAA CCCCGACCCT GATCAACATG AGATGACCGC CGTGTGGTAA 001120
001121 ACTGATGAAC CCCGACCCTG ATCAACATGA GATGACTGCC GTGTGGTAAA CTGATGAACC CTGACCCATT AGGCTTTGGC 001200
001201 TACAGAATGT GGAAATAAGT TGTGTTACTA CATGTGTGTA ATCCTAGGGT GCAGGACACC GGCCGGGAGG TTCCATAGAG 001280
001281 TGATGGGTTC TGCAGGTAAC TCATCCTCTA GTCCTCTGTA AGCTCCTAGA AGGAAGAAAT TATGTCCTTT AGACTAATAA 001360
001361 AATTCCTCCA AACCAAATAC AGCACCTACT GTGAAGACAC AAAGATACTT TTAGAATAGT AAAAACTTTA TCCATTGAGA 001440
001441 AATTCCTTAA TGAAACAGTA TCCAAGAAGT CATTTGCCAG CAGATTTCTT AGAGGTGCGA TAAAGAAGAG GACATTGCCA 001520
001521 GTCGTCACAG CAGCTGCAAT AGCTCCTCTC TATTGTTAAA CAGTGGGATA TCTTGTGCAG GTTTTCAGTT GACAATCAAT 001600
001601 TTTAAAGATT AGTTTCGGTC CCCATCAATC AATTATTTAT TAACCCATCA ATAAAAATTT AAATGCTCTG TGAGGTACAA 001680
001681 TAGCTATTAA AAGAGACAGA GGCACTTTCT GTGTCCAGAG GGGCTTTTAG TCTGCTCTGG AAAGCAAGAT GCGTGCAGAT 001760
001761 GAGTGACGCA GTGCATCGTG TGGATGCAAA GGGAGGGACT CACATGGGAA CCAGAGGAGC TACGAAGGGA GGCAGTGGGG 001840
001841 ACTGGTGGGT CGAGACCTGG AAATAACACA TGAATAGGCA ACAAAGGTTT CCTTTCCTCT TCCATGCACT TCAGTCCTTG 001920
001921 AAAAACGTCT TACCACGGAA TTCCACAGCG TACCAAGCGA TTCCACAGCT TGATGGCACA CTCTCCTTTC TCAGCATTCT 002000
002001 TGAAAATGGC GTGTGAGCCA AGCCATCTTA CTGAGAAATT ACCTTAAACC ATTTGATGAA CCAAAAATAT TTTGTAATAC 002080
002081 CCATCTCCGA CATTAGGTAG GCAAATCACA CAGAAACACC GAGGTCTTCT GAGTCATATT TATCTGAAAA ATCACAGCTT 002160
002161 GGGTGCATGT GAAGCCAGAG GAGCACTCCT GGGGCCTGCG GTGCCATCAC TCAGCTCCCC TGGGCTTCAC ATGGCCATGG 002240
002241 AGCACCCAGC AAGTGTAGGC TCTGAGCCTT CAGGGAGGGG CGGCATCAGC CAGCACCATC GTCTCCTGGG TCTTGTGCCT 002320
002321 CTTCCTTGGT TGCGGTGTTG TCAGGGCCAG AATTGGGCAA TTCCGGGTGA CATCCAGGTG TGGCTGCTGA CACGGAGCAC 002400
002401 AGGTGAGGTT CACTGAGGTA AGTGGGCCAT GGCCTTGGGC TTCTAGTTCA GAGCACACCA TCCACTCAGC ATGTGAACCC 002480
002481 AGCTCCAAAG Cgtatgtgtg catgtgtgta cctgtgcaca ttgcgcatgt ctctgtgtat gcatgtgctt tgatgcatgt 002560
002561 tgatgtacgg gtgtatctgt gtattgtgta tgcacacacg agcatatgtg tacatgaatt tgtattgcac atgtgtTTAA 002640
002641 TGCGAACACG TGTCAtgtgt atgtgttcac atgcatgtgt gtctgtgtac tgtgtgcaac agtgtgtgca agtgtgtata 002720
002721 tgtgggttta tgtttgtaca gtgtgtgtag tgtgtgtaca catatacacc tgtgtgcatg tgtacatggt atttaagcat 002800
002801 gtttgcacgt gtgtttgtgc ttgcatgtgc tgcgtgtttg tgtTGGTGGG ATGTGGGGAG GCTGCTGTGG AGACAAAAGC 002880
002881 TGGAGAGAAC TTGGTAGAGT AACCCAGGTC AGGAAATGGC ACCTGCAAAG GAAGGCTGGA GTGCCTGGGA TTCACGTTGA 002960
002961 AATGGCCAAT CCGTCAGCTG GGCTGGACAC AGCCATCACG CTGGGCAGCT GTGAGGTTAA AACAGAAAGT CTGGGCTGTG 003040
003041 GGGAGGCTGA GAATTGAGAT GCATGTATGA GATGAGTCAC GAGGGCCAAG TGGTGTGTGT GAGAAAGCAG GCACAGCACC 003120
003121 ACTAAACACT AAGGAGATTT CAGGGGAGTT ACGGGTGGAG GGAGGACATC AGATCTACCC TGGAAGTTAA ACGTGTTTCG 003200
003201 AGTGCATTAA ATACTATGGG CCACAGACGC CTTGTCTCCA TATCTACTCT TTTATAAATG AAGTAAAGTT CTTGGGAAAT 003280
003281 ACTTTTCTCA CTCTAAAGCT CACAATCTAT CTTGCAAAAA ATATTTTAAA TTCCATCTCA AATAAGCCAG GGTGAAAAGG 003360
003361 GAGCCTGTGC ACCAGACACT GCCAGCCTTG CCTGGCTCTC GCCTTCTTGC TCTTCCTTCC CCACCTGCTG GGGATTTTCT 003440
003441 TAACGATGGA GATGGGTTTG GGTTTGTCCT GCTGTGCTCT GCTCCCCATT CCCGGATCCA AGGTCCTGCC TCTGTCCTGT 003520
003521 CCCCTGAGCC ACCTCAGGGA TGCAGGGTCC CCCACCTGGT CAAGTGCCCA GTGCTGTGTT GTCATTTGCA AGTTCTTCCT 003600
003601 GTGACTGAAC TCCAAATGGC ACTGGGACTG CTGACTCCAC CCACTGGACA ACCCGTGTTC TTGCTTTTGG GGTTTCTGAA 003680
003681 ACAGCCCCAA GACTCTGGGC ATCTTGATTT TGCTCCCATT GCTTCTCAGG ACACCCTGCT CCTGTGGTTT GCAGCCCCGG 003760
003761 CCTTCTCTTC GAGGACGCCT CTGCTCTTCT GCCTCACACT CGGATTGGAC CTTCTTCAGC ACAGCCAGTG GCCGAGGCTT 003840
003841 CCTCCCTGGG GCTCAGTGGA GCAGGACAGA TGCTGCATCC AAACTCTTCC ATTGGGTTCC AGTCTGTTCC AGTCATGCCC 003920
003921 TTGAGCCTCT AAAGCTCCTA GGTGAGAGAC GTAGCAGCTG ACAGCACTTC CCACTTGATT TGGGTGGACT CCAGCCTCCC 004000
004001 CAGCAACAAT AAGAGATCAA AAGCATCGTT GAGGAAGCAG CTTGCTGAAA CGCTGAGTGC CCGCCACTCT CAGGTCAGGT 004080
004081 GGGACCGGCA GGCCAGCATG AGTTCCTGAA CACTTGGTTC TCAATACTGG CCACAGCCAC ACTGTAAGGG GAAACAAGAG 004160
004161 GGCACTGTAT GCAAACATCT CTTGAACTCT GGAGTCTGCT CACCTTCCTG CCTCAAGCCC CTCTCCCACG TGGTCCAGTC 004240
004241 ACCATTCTCC ACAGAGACTA CCCTAAAACC CAGCGACTCT CGTGTGCCTG CAGAATGGCA CAGCCCGTTC TCATAGCAGC 004320
004321 ACTCCTGTTT AATCAGAGGG ATGTTAACGA CCAAGTCATA TTTGCTCGAT TTGTGTTCAA CATATTTCAT TTGTACCGAT 004400
004401 AAAACTTAAA AATATCCCCA CACATGCATT GCCTATTAAA GAGTATCTTC CAGGTACACC TCCCTTACAC ATCAGTTAAC 004480
004481 TTGATAATTT CTTCCCATTC TTGTGCAATA AATTTCCTTC CTGATCAGCT CTGTCCAGCA GCAACAATAA TCCACGTAGA 004560
004561 GACATGCAAA CTAAAAGTCC GTTAGTGGAG GCACGAAGCT GATGAGGCTT GGAAAAAAAT GACCGATTTG ATTAAAATTA 004640
004641 GGACCCATGG GAGTGGAGCT CTGCCTATTT TAGAGGCAAA GTAAATGCCT GGGAGTCCAA TCACCGACAT TCTGTTTGAG 004720
004721 GTTTCTAATC ACAAGGAAGA TGGAGAAAAT GCAGAACAAG TGGTCAAGAA CAGGGAGATA ATAAATAGAA TATTTATGGG 004800
004801 CTGAGGAAAA CAATTACCAG GGGAAAGCCC AAGAAGCAAA GATGAACAGA GAACGTGCTG ACTGCGCTCG TTTGGAAAGG 004880
004881 CCTCATGGCC AAAGGAGGAG AGGCATTATG AGGAGCAGTG ACCGAGTGGG CAGGACCCCC GGGGATCAGG AAAGGTGCAC 004960
004961 GGGGGGAAAT GAGAGGCCTG AGCGGCTTCC CAGCGAAGGT TTTTGAAGCA CGGTTTGATT TTCTCTCTCC CCCTCACCAT 005040
005041 CCCCAAATTT TAGTTGTGAC TATCTCCAGG TACATGGCTT GCGACAGGCG GTGTATAAAA ACTAATGTCA GTTTAATTTT 005120
005121 AAAACCTTAG CCATTTTCTG GAACTTAAAT ATCAAAGAGA AAATGTCCAC ATATGATGTT AATTGAGGTT TGTCTCACTG 005200
005201 GTGATTTGTG CTGATTCAAT TCCTGTTTCT TTTTTTTTTT CTTAAGGGGT CAGTTTTAGA ATTGGGAGAT AGGTGTATAA 005280
005281 CATATGACTA TACAGCGCAG GTTGGTTTTT TAACATAGAA ATATCTGCCT TTAAATGAGA ACTGAAAACG GAGCTTCTTG 005360
005361 GAGGCCACCT GCTGGTGGCA GTGATCTGAC CGCTGTTTAA GCTTTCTTTG AACTCCTTTT TTTAAAACAG CCTCCATAAT 005440
005441 CAATGGTGTA CGATCTACTC TCGTGGTAAA ACTTACTCAG TGAAGAGTGT GTTTTATTTT CTGAGGAGCT GAACTGTTCC 005520
005521 AACCTGAGTA TTCTGAATAA GGACAGTGGT CGAGCATGAG TGATGCCATC TGGGCTTAGA AATAAGTGGG CCTAAAATCT 005600
005601 GATTGTTTTC ATACATTGTT CAGATATTGA CGCAAATAGC AATTTATTTT GTAAAAAATG ATTGGTATCC GGAACTTGCA 005680
005681 ACAGCTGTGT GTGGCTTGAA GGGAGATGAA GTGGTGAAGG CCTGGTTTCC ACCGAAGCTC TCACAGCCCA GCCTTTCACT 005760
005761 GTGTGGCCGG GGGAAGGGTG CTCCGGGTGG GGGACGGGAA TGGTGGGACT GGGGATGCCA CGGGACAAGG CTGCTGGCCT 005840
005841 GGAAGGTAGT CACGTGGAGA ACCGCAGGAG ATGAGATTGG AAAGTAGTAA TAAGCCATGT GGATAAGAAC AGAGGAGCGG 005920
005921 GTTTTAAGGG GGACGTCCTG AAATGCTGCT CATGTCGTTT CAGTTCCATA GACCACAGGA AATGCAGGTG AGAGGGCAGC 006000
006001 CCGGTGGGAA GGAAGGAAGA GGGTGGTGGT GAGCCAGGTG AGTGTGGAGC CGCCCAGGGC ACCGTGCTGT GCGATAGCTC 006080
006081 AGGCATCGGG TGCTTCTGCC AAACCCTTCA GCAGCTGGTT TGGGGCCAAA CGTCCTTCCT GTGTGAGAGA AGGCAGAGCC 006160
006161 TAGGCAGCAT TCCAAACCCC ATCCAGATGG GAGGCTGAGT GCAGAGCAAA CGGAGCCCAG CACTCCAGAG CCGTGTCCCT 006240
006241 TCACTGCCAT gatcacatca caaacagcga ggcttggaga ggacttaaga gctccttcaa tgccatcttc catccactgc 006320
006321 GTGAGCCAGA ATAGAAAAAA AGGAATAAGA AGAGGTCGGT TAAGCTCTCT ATTAAGTTGA GAAAATGGGA ACTTCAGGTG 006400
006401 ATCATGTGAG ATATTCAAGT TAAAAAAATT ATTTAAAAAG CACATTCTTA TTATTAAAAT TTTAGAAAGT ACAGAGAAGG 006480
006481 AAATTTTAAT AACCTACACC TAGAACACTA AGATACTGGT AACGTAGAAA AATGTGTAGT TAATGCCTTG ATGGATTCTT 006560
006561 TTCTATTTTT TTCTCTAGCA ATATTTATGT CTATCCACAG AAAGCGTACA CTCATGTATT TGCATGGCTA ATatatttta 006640
006641 tgtaaagttc tatatatttc tcaacatttc acttaatatt tctttataaa catttttcca gtgaataaaa atttttccaa 006720
006721 acagtaa
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Predicted Small Protein

Name NONHSAT000163_smProtein_305:580
Length 92
Molecular weight 9983.423
Aromaticity 0.0769230769231
Instability index 40.5846153846
Isoelectric point 5.29876708984
Runs 14
Runs residual 0.0203754578755
Runs probability 0.0480922098569
Amino acid sequence MEFFIPTSVDLKILPLSACLGSAVSSLPWFSDDACNNAMRFAHSWVTLVIHSGGDLTCHC
EQLLLLDDPGHRPASTYPSVLENRARLLPLC
Secondary structure LEEEELLLLLLEELLLLHHHLLLLLLLLLLLHHHHHHHHHHHHHHEEEEEELLLLLLHHH
HHHHHLLLLLLLLLLLLLHHHHHHHHHLLLL
PRMN -
PiMo -