NONHSAT000163
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000163 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6727 nt |
Genomic location |
chr1+:762971..794826 |
Exon number |
7 |
Exons |
762971..763155,764383..764484,783034..783186,787307..787490,788051..788146,788771..788809,788859..794826 |
Genome context |
|
Sequence |
000001 ccgggccggg ccggggcggg gtctcgggca ggggcggggA GCTTACCGAC CTCCCGCCCC CGCTGCGCGC GTTTCTGGCC 000080
000081 CTGCCAGTGT CTCCGCCGGT TGAAAGCGCG TGTCTGCGTC GGGTTCTGTT GGAGTGCGTT CGGTGCGCCG TGGGTCCGCG 000160 000161 CTGCTTCCAC CCAACTTCCT GTTAGtttct ctcctgtcac aatggcatga tctcggctca ctgcgacctc tgcttcctgg 000240 000241 gttcaaggat tctcctgcct cagcctccca agtagctggg attacagTTT CCATCATTAT CTTCTATGGA GTTCTTCATT 000320 000321 CCCACATCTG TGGACCTTAA AATCCTACCG TTGAGTGCCT GCCTTGGATC AGCAGTCAGT TCGTTACCTT GGTTCTCAGA 000400 000401 CGATGCTTGC AACAACGCCA TGCGATTCGC CCACTCTTGG GTTACATTAG TTATACACTC TGGAGGTGAC TTGACCTGTC 000480 000481 ATTGTGAACA ATTATTGCTC TTGGACGACC CAGGACATAG GCCAGCCAGT ACGTACCCCA GTGTGTTGGA GAATCGCGCT 000560 000561 CGGCTTCTTC CTCTGTGCTG AGTCATGAAA GTTGCCGGAG CAGGTGCAGT TACACAACCT CCAGGTATGA TCCTGTTTAA 000640 000641 GGACTGGATT TAGGATAACT ACTTAGAGGT TAAAAGTCAC AAGGGTGTAT GGATGAGGCT GGAGTGATCT GGGACCAAAG 000720 000721 acatctaggc ttgctgtcaa ggcttctgat caacatgagA TGACCGCCGT GTGGTAAACT GATGAACCCC GACCCTGATG 000800 000801 AACGTGAGAT GACCGCCGTG TGGTAAACTG ATGAACCCCG ACCCTGATGA ACGTGAGATG ACCGCCGTGT GGTAAACTGA 000880 000881 TGAACCCCGA CCCTGATGAA CGTGAGATGA CCGCCGTGTG GTAAACTGAT GAACCCCGAC CCTGATGAAC GTGAGATGAC 000960 000961 CGCCGTGTGG TAAACTGATG AACCCCGACC CTGATCAACG TGAGATGACC GCCGTGTGGT AAACTGATGA ACCCCGACCC 001040 001041 TGATGAACAT GAGATGACCG CCGTGTGGTA AACTGATGAA CCCCGACCCT GATCAACATG AGATGACCGC CGTGTGGTAA 001120 001121 ACTGATGAAC CCCGACCCTG ATCAACATGA GATGACTGCC GTGTGGTAAA CTGATGAACC CTGACCCATT AGGCTTTGGC 001200 001201 TACAGAATGT GGAAATAAGT TGTGTTACTA CATGTGTGTA ATCCTAGGGT GCAGGACACC GGCCGGGAGG TTCCATAGAG 001280 001281 TGATGGGTTC TGCAGGTAAC TCATCCTCTA GTCCTCTGTA AGCTCCTAGA AGGAAGAAAT TATGTCCTTT AGACTAATAA 001360 001361 AATTCCTCCA AACCAAATAC AGCACCTACT GTGAAGACAC AAAGATACTT TTAGAATAGT AAAAACTTTA TCCATTGAGA 001440 001441 AATTCCTTAA TGAAACAGTA TCCAAGAAGT CATTTGCCAG CAGATTTCTT AGAGGTGCGA TAAAGAAGAG GACATTGCCA 001520 001521 GTCGTCACAG CAGCTGCAAT AGCTCCTCTC TATTGTTAAA CAGTGGGATA TCTTGTGCAG GTTTTCAGTT GACAATCAAT 001600 001601 TTTAAAGATT AGTTTCGGTC CCCATCAATC AATTATTTAT TAACCCATCA ATAAAAATTT AAATGCTCTG TGAGGTACAA 001680 001681 TAGCTATTAA AAGAGACAGA GGCACTTTCT GTGTCCAGAG GGGCTTTTAG TCTGCTCTGG AAAGCAAGAT GCGTGCAGAT 001760 001761 GAGTGACGCA GTGCATCGTG TGGATGCAAA GGGAGGGACT CACATGGGAA CCAGAGGAGC TACGAAGGGA GGCAGTGGGG 001840 001841 ACTGGTGGGT CGAGACCTGG AAATAACACA TGAATAGGCA ACAAAGGTTT CCTTTCCTCT TCCATGCACT TCAGTCCTTG 001920 001921 AAAAACGTCT TACCACGGAA TTCCACAGCG TACCAAGCGA TTCCACAGCT TGATGGCACA CTCTCCTTTC TCAGCATTCT 002000 002001 TGAAAATGGC GTGTGAGCCA AGCCATCTTA CTGAGAAATT ACCTTAAACC ATTTGATGAA CCAAAAATAT TTTGTAATAC 002080 002081 CCATCTCCGA CATTAGGTAG GCAAATCACA CAGAAACACC GAGGTCTTCT GAGTCATATT TATCTGAAAA ATCACAGCTT 002160 002161 GGGTGCATGT GAAGCCAGAG GAGCACTCCT GGGGCCTGCG GTGCCATCAC TCAGCTCCCC TGGGCTTCAC ATGGCCATGG 002240 002241 AGCACCCAGC AAGTGTAGGC TCTGAGCCTT CAGGGAGGGG CGGCATCAGC CAGCACCATC GTCTCCTGGG TCTTGTGCCT 002320 002321 CTTCCTTGGT TGCGGTGTTG TCAGGGCCAG AATTGGGCAA TTCCGGGTGA CATCCAGGTG TGGCTGCTGA CACGGAGCAC 002400 002401 AGGTGAGGTT CACTGAGGTA AGTGGGCCAT GGCCTTGGGC TTCTAGTTCA GAGCACACCA TCCACTCAGC ATGTGAACCC 002480 002481 AGCTCCAAAG Cgtatgtgtg catgtgtgta cctgtgcaca ttgcgcatgt ctctgtgtat gcatgtgctt tgatgcatgt 002560 002561 tgatgtacgg gtgtatctgt gtattgtgta tgcacacacg agcatatgtg tacatgaatt tgtattgcac atgtgtTTAA 002640 002641 TGCGAACACG TGTCAtgtgt atgtgttcac atgcatgtgt gtctgtgtac tgtgtgcaac agtgtgtgca agtgtgtata 002720 002721 tgtgggttta tgtttgtaca gtgtgtgtag tgtgtgtaca catatacacc tgtgtgcatg tgtacatggt atttaagcat 002800 002801 gtttgcacgt gtgtttgtgc ttgcatgtgc tgcgtgtttg tgtTGGTGGG ATGTGGGGAG GCTGCTGTGG AGACAAAAGC 002880 002881 TGGAGAGAAC TTGGTAGAGT AACCCAGGTC AGGAAATGGC ACCTGCAAAG GAAGGCTGGA GTGCCTGGGA TTCACGTTGA 002960 002961 AATGGCCAAT CCGTCAGCTG GGCTGGACAC AGCCATCACG CTGGGCAGCT GTGAGGTTAA AACAGAAAGT CTGGGCTGTG 003040 003041 GGGAGGCTGA GAATTGAGAT GCATGTATGA GATGAGTCAC GAGGGCCAAG TGGTGTGTGT GAGAAAGCAG GCACAGCACC 003120 003121 ACTAAACACT AAGGAGATTT CAGGGGAGTT ACGGGTGGAG GGAGGACATC AGATCTACCC TGGAAGTTAA ACGTGTTTCG 003200 003201 AGTGCATTAA ATACTATGGG CCACAGACGC CTTGTCTCCA TATCTACTCT TTTATAAATG AAGTAAAGTT CTTGGGAAAT 003280 003281 ACTTTTCTCA CTCTAAAGCT CACAATCTAT CTTGCAAAAA ATATTTTAAA TTCCATCTCA AATAAGCCAG GGTGAAAAGG 003360 003361 GAGCCTGTGC ACCAGACACT GCCAGCCTTG CCTGGCTCTC GCCTTCTTGC TCTTCCTTCC CCACCTGCTG GGGATTTTCT 003440 003441 TAACGATGGA GATGGGTTTG GGTTTGTCCT GCTGTGCTCT GCTCCCCATT CCCGGATCCA AGGTCCTGCC TCTGTCCTGT 003520 003521 CCCCTGAGCC ACCTCAGGGA TGCAGGGTCC CCCACCTGGT CAAGTGCCCA GTGCTGTGTT GTCATTTGCA AGTTCTTCCT 003600 003601 GTGACTGAAC TCCAAATGGC ACTGGGACTG CTGACTCCAC CCACTGGACA ACCCGTGTTC TTGCTTTTGG GGTTTCTGAA 003680 003681 ACAGCCCCAA GACTCTGGGC ATCTTGATTT TGCTCCCATT GCTTCTCAGG ACACCCTGCT CCTGTGGTTT GCAGCCCCGG 003760 003761 CCTTCTCTTC GAGGACGCCT CTGCTCTTCT GCCTCACACT CGGATTGGAC CTTCTTCAGC ACAGCCAGTG GCCGAGGCTT 003840 003841 CCTCCCTGGG GCTCAGTGGA GCAGGACAGA TGCTGCATCC AAACTCTTCC ATTGGGTTCC AGTCTGTTCC AGTCATGCCC 003920 003921 TTGAGCCTCT AAAGCTCCTA GGTGAGAGAC GTAGCAGCTG ACAGCACTTC CCACTTGATT TGGGTGGACT CCAGCCTCCC 004000 004001 CAGCAACAAT AAGAGATCAA AAGCATCGTT GAGGAAGCAG CTTGCTGAAA CGCTGAGTGC CCGCCACTCT CAGGTCAGGT 004080 004081 GGGACCGGCA GGCCAGCATG AGTTCCTGAA CACTTGGTTC TCAATACTGG CCACAGCCAC ACTGTAAGGG GAAACAAGAG 004160 004161 GGCACTGTAT GCAAACATCT CTTGAACTCT GGAGTCTGCT CACCTTCCTG CCTCAAGCCC CTCTCCCACG TGGTCCAGTC 004240 004241 ACCATTCTCC ACAGAGACTA CCCTAAAACC CAGCGACTCT CGTGTGCCTG CAGAATGGCA CAGCCCGTTC TCATAGCAGC 004320 004321 ACTCCTGTTT AATCAGAGGG ATGTTAACGA CCAAGTCATA TTTGCTCGAT TTGTGTTCAA CATATTTCAT TTGTACCGAT 004400 004401 AAAACTTAAA AATATCCCCA CACATGCATT GCCTATTAAA GAGTATCTTC CAGGTACACC TCCCTTACAC ATCAGTTAAC 004480 004481 TTGATAATTT CTTCCCATTC TTGTGCAATA AATTTCCTTC CTGATCAGCT CTGTCCAGCA GCAACAATAA TCCACGTAGA 004560 004561 GACATGCAAA CTAAAAGTCC GTTAGTGGAG GCACGAAGCT GATGAGGCTT GGAAAAAAAT GACCGATTTG ATTAAAATTA 004640 004641 GGACCCATGG GAGTGGAGCT CTGCCTATTT TAGAGGCAAA GTAAATGCCT GGGAGTCCAA TCACCGACAT TCTGTTTGAG 004720 004721 GTTTCTAATC ACAAGGAAGA TGGAGAAAAT GCAGAACAAG TGGTCAAGAA CAGGGAGATA ATAAATAGAA TATTTATGGG 004800 004801 CTGAGGAAAA CAATTACCAG GGGAAAGCCC AAGAAGCAAA GATGAACAGA GAACGTGCTG ACTGCGCTCG TTTGGAAAGG 004880 004881 CCTCATGGCC AAAGGAGGAG AGGCATTATG AGGAGCAGTG ACCGAGTGGG CAGGACCCCC GGGGATCAGG AAAGGTGCAC 004960 004961 GGGGGGAAAT GAGAGGCCTG AGCGGCTTCC CAGCGAAGGT TTTTGAAGCA CGGTTTGATT TTCTCTCTCC CCCTCACCAT 005040 005041 CCCCAAATTT TAGTTGTGAC TATCTCCAGG TACATGGCTT GCGACAGGCG GTGTATAAAA ACTAATGTCA GTTTAATTTT 005120 005121 AAAACCTTAG CCATTTTCTG GAACTTAAAT ATCAAAGAGA AAATGTCCAC ATATGATGTT AATTGAGGTT TGTCTCACTG 005200 005201 GTGATTTGTG CTGATTCAAT TCCTGTTTCT TTTTTTTTTT CTTAAGGGGT CAGTTTTAGA ATTGGGAGAT AGGTGTATAA 005280 005281 CATATGACTA TACAGCGCAG GTTGGTTTTT TAACATAGAA ATATCTGCCT TTAAATGAGA ACTGAAAACG GAGCTTCTTG 005360 005361 GAGGCCACCT GCTGGTGGCA GTGATCTGAC CGCTGTTTAA GCTTTCTTTG AACTCCTTTT TTTAAAACAG CCTCCATAAT 005440 005441 CAATGGTGTA CGATCTACTC TCGTGGTAAA ACTTACTCAG TGAAGAGTGT GTTTTATTTT CTGAGGAGCT GAACTGTTCC 005520 005521 AACCTGAGTA TTCTGAATAA GGACAGTGGT CGAGCATGAG TGATGCCATC TGGGCTTAGA AATAAGTGGG CCTAAAATCT 005600 005601 GATTGTTTTC ATACATTGTT CAGATATTGA CGCAAATAGC AATTTATTTT GTAAAAAATG ATTGGTATCC GGAACTTGCA 005680 005681 ACAGCTGTGT GTGGCTTGAA GGGAGATGAA GTGGTGAAGG CCTGGTTTCC ACCGAAGCTC TCACAGCCCA GCCTTTCACT 005760 005761 GTGTGGCCGG GGGAAGGGTG CTCCGGGTGG GGGACGGGAA TGGTGGGACT GGGGATGCCA CGGGACAAGG CTGCTGGCCT 005840 005841 GGAAGGTAGT CACGTGGAGA ACCGCAGGAG ATGAGATTGG AAAGTAGTAA TAAGCCATGT GGATAAGAAC AGAGGAGCGG 005920 005921 GTTTTAAGGG GGACGTCCTG AAATGCTGCT CATGTCGTTT CAGTTCCATA GACCACAGGA AATGCAGGTG AGAGGGCAGC 006000 006001 CCGGTGGGAA GGAAGGAAGA GGGTGGTGGT GAGCCAGGTG AGTGTGGAGC CGCCCAGGGC ACCGTGCTGT GCGATAGCTC 006080 006081 AGGCATCGGG TGCTTCTGCC AAACCCTTCA GCAGCTGGTT TGGGGCCAAA CGTCCTTCCT GTGTGAGAGA AGGCAGAGCC 006160 006161 TAGGCAGCAT TCCAAACCCC ATCCAGATGG GAGGCTGAGT GCAGAGCAAA CGGAGCCCAG CACTCCAGAG CCGTGTCCCT 006240 006241 TCACTGCCAT gatcacatca caaacagcga ggcttggaga ggacttaaga gctccttcaa tgccatcttc catccactgc 006320 006321 GTGAGCCAGA ATAGAAAAAA AGGAATAAGA AGAGGTCGGT TAAGCTCTCT ATTAAGTTGA GAAAATGGGA ACTTCAGGTG 006400 006401 ATCATGTGAG ATATTCAAGT TAAAAAAATT ATTTAAAAAG CACATTCTTA TTATTAAAAT TTTAGAAAGT ACAGAGAAGG 006480 006481 AAATTTTAAT AACCTACACC TAGAACACTA AGATACTGGT AACGTAGAAA AATGTGTAGT TAATGCCTTG ATGGATTCTT 006560 006561 TTCTATTTTT TTCTCTAGCA ATATTTATGT CTATCCACAG AAAGCGTACA CTCATGTATT TGCATGGCTA ATatatttta 006640 006641 tgtaaagttc tatatatttc tcaacatttc acttaatatt tctttataaa catttttcca gtgaataaaa atttttccaa 006720 006721 acagtaa |
Predicted Small Protein
Name | NONHSAT000163_smProtein_305:580 |
Length | 92 |
Molecular weight | 9983.423 |
Aromaticity | 0.0769230769231 |
Instability index | 40.5846153846 |
Isoelectric point | 5.29876708984 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0480922098569 |
Amino acid sequence | MEFFIPTSVDLKILPLSACLGSAVSSLPWFSDDACNNAMRFAHSWVTLVIHSGGDLTCHC EQLLLLDDPGHRPASTYPSVLENRARLLPLC |
Secondary structure | LEEEELLLLLLEELLLLHHHLLLLLLLLLLLHHHHHHHHHHHHHHEEEEEELLLLLLHHH HHHHHLLLLLLLLLLLLLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |