NONHSAT000166
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000166 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1543 nt |
Genomic location |
chr1+:763064..789740 |
Exon number |
7 |
Exons |
763064..763155,764383..764484,783034..783186,787307..787490,788051..788146,788771..788902,788957..789740 |
Genome context |
|
Sequence |
000001 CGCCGGTTGA AAGCGCGTGT CTGCGTCGGG TTCTGTTGGA GTGCGTTCGG TGCGCCGTGG GTCCGCGCTG CTTCCACCCA 000080
000081 ACTTCCTGTT AGTTTCTCTC CTGTCACAAT GGCATGATCT CGGCTCACTG CGACCTCTGC TTCCTGGGTT CAAGGATTCT 000160 000161 CCTGCCTCAG CCTCCCAAGT AGCTGGGATT ACAGTTTCCA TCATTATCTT CTATGGAGTT CTTCATTCCC ACATCTGTGG 000240 000241 ACCTTAAAAT CCTACCGTTG AGTGCCTGCC TTGGATCAGC AGTCAGTTCG TTACCTTGGT TCTCAGACGA TGCTTGCAAC 000320 000321 AACGCCATGC GATTCGCCCA CTCTTGGGTT ACATTAGTTA TACACTCTGG AGGTGACTTG ACCTGTCATT GTGAACAATT 000400 000401 ATTGCTCTTG GACGACCCAG GACATAGGCC AGCCAGTACG TACCCCAGTG TGTTGGAGAA TCGCGCTCGG CTTCTTCCTC 000480 000481 TGTGCTGAGT CATGAAAGTT GCCGGAGCAG GTGCAGTTAC ACAACCTCCA GGTATGATCC TGTTTAAGGA CTGGATTTAG 000560 000561 GATAACTACT TAGAGGTTAA AAGTCACAAG GGTGTATGGA TGAGGCTGGA GTGATCTGGG ACCAAAGACA TCTAGGCTTG 000640 000641 CTGTCAAGGC TTCTGATCAA CATGAGATGA CCGCCGTGTG GTAAACTGAT GAACCCTGAC CCTGATCAAC ATGAGATGAC 000720 000721 CGCCGTGTGG TAAACTGATG AACCCCGACC CTGATGAACA TGACCGCCGT GTGGTAAACT GATGAACCCC GACCCTGATG 000800 000801 AACGTGAGAT GACCGCCGTG TGGTAAACTG ATGAACCCCG ACCCTGATGA ACGTGAGATG ACCGCCGTGT GGTAAACTGA 000880 000881 TGAACCCCGA CCCTGATCAA CGTGAGATGA CCGCCGTGTG GTAAACTGAT GAACCCCGAC CCTGATGAAC ATGAGATGAC 000960 000961 CGCCGTGTGG TAAACTGATG AACCCCGACC CTGATCAACA TGAGATGACC GCCGTGTGGT AAACTGATGA ACCCCGACCC 001040 001041 TGATCAACAT GAGATGACTG CCGTGTGGTA AACTGATGAA CCCTGACCCA TTAGGCTTTG GCTACAGAAT GTGGAAATAA 001120 001121 GTTGTGTTAC TACATGTGTG TAATCCTAGG GTGCAGGACA CCGGCCGGGA GGTTCCATAG AGTGATGGGT TCTGCAGGTA 001200 001201 ACTCATCCTC TAGTCCTCTG TAAGCTCCTA GAAGGAAGAA ATTATGTCCT TTAGACTAAT AAAATTCCTC CAAACCAAAT 001280 001281 ACAGCACCTA CTGTGAAGAC ACAAAGATAC TTTTAGAATA GTAAAAACTT TATCCATTGA GAAATTCCTT AATGAAACAG 001360 001361 TATCCAAGAA GTCATTTGCC AGCAGATTTC TTAGAGGTGC GATAAAGAAG AGGACATTGC CAGTCGTCAC AGCAGCTGCA 001440 001441 ATAGCTCCTC TCTATTGTTA AACAGTGGGA TATCTTGTGC AGGTTTTCAG TTGACAATCA ATTTTAAAGA TTAGTTTCGG 001520 001521 TCCCCATCAA TCAATTATTT ATT |
Predicted Small Protein
Name | NONHSAT000166_smProtein_212:487 |
Length | 92 |
Molecular weight | 9983.423 |
Aromaticity | 0.0769230769231 |
Instability index | 40.5846153846 |
Isoelectric point | 5.29876708984 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0480922098569 |
Amino acid sequence | MEFFIPTSVDLKILPLSACLGSAVSSLPWFSDDACNNAMRFAHSWVTLVIHSGGDLTCHC EQLLLLDDPGHRPASTYPSVLENRARLLPLC |
Secondary structure | LEEEELLLLLLEELLLLHHHLLLLLLLLLLLHHHHHHHHHHHHHHEEEEEELLLLLLHHH HHHHHLLLLLLLLLLLLLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |