NONHSAT000177
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000177 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3675 nt |
Genomic location |
chr1+:782945..793145 |
Exon number |
4 |
Exons |
782945..783186,787307..787490,788771..790501,791628..793145 |
Genome context |
|
Sequence |
000001 CTGGAAAGAA GGAAGGGTGA TCCTGCTAAG ACAGGGCGTT GTGAAGATTT CCTTTCCCTC CGAACTAACA TCTCACTCAC 000080
000081 TTCTCTCAGT TTCCATCATT ATCTTCTATG GAGTTCTTCA TTCCCACATC TGTGGACCTT AAAATCCTAC CGTTGAGTGC 000160 000161 CTGCCTTGGA TCAGCAGTCA GTTCGTTACC TTGGTTCTCA GACGATGCTT GCAACAACGC CATGCGATTC GCCCACTCTT 000240 000241 GGGTTACATT AGTTATACAC TCTGGAGGTG ACTTGACCTG TCATTGTGAA CAATTATTGC TCTTGGACGA CCCAGGACAT 000320 000321 AGGCCAGCCA GTACGTACCC CAGTGTGTTG GAGAATCGCG CTCGGCTTCT TCCTCTGTGC TGAGTCATGA AAGTTGCCGG 000400 000401 AGCAGGTGCA GTTACACAAC CTCCAGacat ctaggcttgc tgtcaaggct tctgatcaac atgagatgac cGCCGTGTGG 000480 000481 TAAACTGATG AACCCTGACC CTGATCAACA TGAGATGACC GCCGTGTGGT AAACTGATGA ACCCCGACCC TGATGAACGT 000560 000561 GAGATGACCG CCGTGTGGTA AACTGATGAA CCCCGACCCT GATGAACGTG AGATGACCGC CGTGTGGTAA ACTGATGAAC 000640 000641 CCCGACCCTG ATGAACGTGA GATGACCGCC GTGTGGTAAA CTGATGAACC CCGACCCTGA TGAACGTGAG ATGACCGCCG 000720 000721 TGTGGTAAAC TGATGAACCC CGACCCTGAT CAACGTGAGA TGACCGCCGT GTGGTAAACT GATGAACCCC GACCCTGATG 000800 000801 AACATGAGAT GACCGCCGTG TGGTAAACTG ATGAACCCCG ACCCTGATCA ACATGAGATG ACCGCCGTGT GGTAAACTGA 000880 000881 TGAACCCCGA CCCTGATCAA CATGAGATGA CTGCCGTGTG GTAAACTGAT GAACCCTGAC CCATTAGGCT TTGGCTACAG 000960 000961 AATGTGGAAA TAAGTTGTGT TACTACATGT GTGTAATCCT AGGGTGCAGG ACACCGGCCG GGAGGTTCCA TAGAGTGATG 001040 001041 GGTTCTGCAG GTAACTCATC CTCTAGTCCT CTGTAAGCTC CTAGAAGGAA GAAATTATGT CCTTTAGACT AATAAAATTC 001120 001121 CTCCAAACCA AATACAGCAC CTACTGTGAA GACACAAAGA TACTTTTAGA ATAGTAAAAA CTTTATCCAT TGAGAAATTC 001200 001201 CTTAATGAAA CAGTATCCAA GAAGTCATTT GCCAGCAGAT TTCTTAGAGG TGCGATAAAG AAGAGGACAT TGCCAGTCGT 001280 001281 CACAGCAGCT GCAATAGCTC CTCTCTATTG TTAAACAGTG GGATATCTTG TGCAGGTTTT CAGTTGACAA TCAATTTTAA 001360 001361 AGATTAGTTT CGGTCCCCAT CAATCAATTA TTTATTAACC CATCAATAAA AATTTAAATG CTCTGTGAGG TACAATAGCT 001440 001441 ATTAAAAGAG ACAGAGGCAC TTTCTGTGTC CAGAGGGGCT TTTAGTCTGC TCTGGAAAGC AAGATGCGTG CAGATGAGTG 001520 001521 ACGCAGTGCA TCGTGTGGAT GCAAAGGGAG GGACTCACAT GGGAACCAGA GGAGCTACGA AGGGAGGCAG TGGGGACTGG 001600 001601 TGGGTCGAGA CCTGGAAATA ACACATGAAT AGGCAACAAA GGTTTCCTTT CCTCTTCCAT GCACTTCAGT CCTTGAAAAA 001680 001681 CGTCTTACCA CGGAATTCCA CAGCGTACCA AGCGATTCCA CAGCTTGATG GCACACTCTC CTTTCTCAGC ATTCTTGAAA 001760 001761 ATGGCGTGTG AGCCAAGCCA TCTTACTGAG AAATTACCTT AAACCATTTG ATGAACCAAA AATATTTTGT AATACCCATC 001840 001841 TCCGACATTA GGTAGGCAAA TCACACAGAA ACACCGAGGT CTTCTGAGTC ATATTTATCT GAAAAATCAC AGCTTGGGTG 001920 001921 CATGTGAAGC CAGAGGAGCA CTCCTGGGGC CTGCGGTGCC ATCACTCAGC TCCCCTGGGC TTCACATGGC CATGGAGCAC 002000 002001 CCAGCAAGTG TAGGCTCTGA GCCTTCAGGG AGGGGCGGCA TCAGCCAGCA CCATCGTCTC CTGGGTCTTG TGCCTCTTCC 002080 002081 TTGGTTGCGG TGTTGTCAGG GCCAGAATTG GGCAATTCCG GGTGACATCC AGGTGTGGCT GCTGACACGG AGCACAGCCA 002160 002161 CCTCAGGGAT GCAGGGTCCC CCACCTGGTC AAGTGCCCAG TGCTGTGTTG TCATTTGCAA GTTCTTCCTG TGACTGAACT 002240 002241 CCAAATGGCA CTGGGACTGC TGACTCCACC CACTGGACAA CCCGTGTTCT TGCTTTTGGG GTTTCTGAAA CAGCCCCAAG 002320 002321 ACTCTGGGCA TCTTGATTTT GCTCCCATTG CTTCTCAGGA CACCCTGCTC CTGTGGTTTG CAGCCCCGGC CTTCTCTTCG 002400 002401 AGGACGCCTC TGCTCTTCTG CCTCACACTC GGATTGGACC TTCTTCAGCA CAGCCAGTGG CCGAGGCTTC CTCCCTGGGG 002480 002481 CTCAGTGGAG CAGGACAGAT GCTGCATCCA AACTCTTCCA TTGGGTTCCA GTCTGTTCCA GTCATGCCCT TGAGCCTCTA 002560 002561 AAGCTCCTAG GTGAGAGACG TAGCAGCTGA CAGCACTTCC CACTTGATTT GGGTGGACTC CAGCCTCCCC AGCAACAATA 002640 002641 AGAGATCAAA AGCATCGTTG AGGAAGCAGC TTGCTGAAAC GCTGAGTGCC CGCCACTCTC AGGTCAGGTG GGACCGGCAG 002720 002721 GCCAGCATGA GTTCCTGAAC ACTTGGTTCT CAATACTGGC CACAGCCACA CTGTAAGGGG AAACAAGAGG GCACTGTATG 002800 002801 CAAACATCTC TTGAACTCTG GAGTCTGCTC ACCTTCCTGC CTCAAGCCCC TCTCCCACGT GGTCCAGTCA CCATTCTCCA 002880 002881 CAGAGACTAC CCTAAAACCC AGCGACTCTC GTGTGCCTGC AGAATGGCAC AGCCCGTTCT CATAGCAGCA CTCCTGTTTA 002960 002961 ATCAGAGGGA TGTTAACGAC CAAGTCATAT TTGCTCGATT TGTGTTCAAC ATATTTCATT TGTACCGATA AAACTTAAAA 003040 003041 ATATCCCCAC ACATGCATTG CCTATTAAAG AGTATCTTCC AGGTACACCT CCCTTACACA TCAGTTAACT TGATAATTTC 003120 003121 TTCCCATTCT TGTGCAATAA ATTTCCTTCC TGATCAGCTC TGTCCAGCAG CAACAATAAT CCACGTAGAG ACATGCAAAC 003200 003201 TAAAAGTCCG TTAGTGGAGG CACGAAGCTG ATGAGGCTTG GAAAAAAATG ACCGATTTGA TTAAAATTAG GACCCATGGG 003280 003281 AGTGGAGCTC TGCCTATTTT AGAGGCAAAG TAAATGCCTG GGAGTCCAAT CACCGACATT CTGTTTGAGG TTTCTAATCA 003360 003361 CAAGGAAGAT GGAGAAAATG CAGAACAAGT GGTCAAGAAC AGGGAGATAA TAAATAGAAT ATTTATGGGC TGAGGAAAAC 003440 003441 AATTACCAGG GGAAAGCCCA AGAAGCAAAG ATGAACAGAG AACGTGCTGA CTGCGCTCGT TTGGAAAGGC CTCATGGCCA 003520 003521 AAGGAGGAGA GGCATTATGA GGAGCAGTGA CCGAGTGGGC AGGACCCCCG GGGATCAGGA AAGGTGCACG GGGGGAAATG 003600 003601 AGAGGCCTGA GCGGCTTCCC AGCGAAGGTT TTTGAAGCAC GGTTTGATTT TCTCTCTCCC CCTCACCATC CCCAA |
Predicted Small Protein
Name | NONHSAT000177_smProtein_107:382 |
Length | 92 |
Molecular weight | 9983.423 |
Aromaticity | 0.0769230769231 |
Instability index | 40.5846153846 |
Isoelectric point | 5.29876708984 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0480922098569 |
Amino acid sequence | MEFFIPTSVDLKILPLSACLGSAVSSLPWFSDDACNNAMRFAHSWVTLVIHSGGDLTCHC EQLLLLDDPGHRPASTYPSVLENRARLLPLC |
Secondary structure | LEEEELLLLLLEELLLLHHHLLLLLLLLLLLHHHHHHHHHHHHHHEEEEEELLLLLLHHH HHHHHLLLLLLLLLLLLLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |