NONHSAT001342
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT001342 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4129 nt |
Genomic location |
chr1+:20465823..20470573 |
Exon number |
2 |
Exons |
20465823..20466036,20466659..20470573 |
Genome context |
|
Sequence |
000001 TGCGAGGCAG CGTGAAGCTG GGGCCTGCTC CCCGCAGCCT CTGGAGCGCA TCTCAGACCT TCTGAGACCT ATGTTGCTGG 000080
000081 CCCCCCAGAA CCCGCAACAT GGCAGATGGG GCAAAGGCCA ACCCCAAAGG GTTCAAAAAG AAGGTGCTGG ATAGATGCTT 000160 000161 CTCTGGGTGG AGGGGCCCAC GCTTCGGGGC CTCCTGTCCT TCAAGAACCT CCAGGTCTAG CCTGGGTATG AAGAAGTTCT 000240 000241 TCACCGTGGC CATCCTTGCT GGCAGCGGTG AGTAAAGACT CCAGAGGGCT CCTCCTTCTC TCCCACTCCC AGCTTGTCTC 000320 000321 CCGTGACCTT GGGCGCCTGA GTTATGGTTC CACTGACCAG CCTAGGTTCC TTCCTGTCTC TGGGCTTCTG CTTCTTGTCT 000400 000401 CAGCCCAGCA GGCTGCACCC AATTCTGGGG CTGTTTACCC CTCCAGCCAC CTGTAAACAT GCATTTATGA GCCCTGGGGG 000480 000481 GCAGGGCGCA GGGCTGAGCA AGCATCGTAA AATGCTGGTG TTGGCTGGGC ATTTGTGTAC CTGAATGTGT ACTAGTGTGT 000560 000561 GTCCATCAGA CTGGAGTTAA TGATTTTGTG TGCAGACAGG CACAGGCATC TATGTGTGTG TAGGTGTGTC TGAGCATGTG 000640 000641 ATGATGTCTA TGTGTGCAAC ATGCATCCAT AAAGTATGTG ACAGTGTAGG CACCTGAGTG CGAGCCCATT TGTGTCTCTT 000720 000721 TGTGTGAGTG TGTGTTAATT GGGGTGTGTG TCTTCAGAGC ATGCTTATGG ATGAAGGGTG CATAGATCTG CAGGAGGGTG 000800 000801 TGTGTGTGTA GGATGGGTGT CTGTGTACTG CATAGTGGTG GGAGGTCAGG GGCTTCTTTC TGGGGTTGGT ACCCAGGGCA 000880 000881 TCATGGCTCT GGGCAGCCGC CCCATAGGAT TGTTGCGTGA GGCTCTTGAC ACAGACCTGA CCCTGCCACT CGTCCCGGCA 000960 000961 TCATTTATGT GGCAGGTGTC CCAGCTCCAT GGACCATTGG CTGGGCCTCT CACTGGCCTT GCATGCAGCC TGTTAAACCT 001040 001041 CGCCAGAACA CAGCCTGGCT TGAGGAAAAG AAATAAATGA CAAAAACCAA AATAAGGTTC CACGTGGCCA GACGTGAGAG 001120 001121 AGGGCTGGTT GCATTCAGGC AAAGTGACTT GTTATTGAGA AGACGACTGC TTGAGTTCAG TCCAAGCCAC TGGTTAGGGG 001200 001201 CAGAGCCTTC AACCCAACTG AATGCGGACT TGGATTCCTT CGCTTGGACG GTCAGTGTGG ATGTGGCCTT GGGCCAGGCC 001280 001281 CCTGATTCTC CCCTGGATGC GTTGTGTATG TGAGTGCATC TGTAATGCAC GAGGGCGAgt gtgcaagtgt gtgtatcagg 001360 001361 tatgtgtggg tgtatatcat gtatgtatgg gtgagtgtag gtgtatgagt gtatcaggta tgtatgtgtg agtgttgagt 001440 001441 gtatcaggta tgtgggggtg agtgtgagtt tgaggtgtct gggaatgagt gtgtatgcaa gtgcatgtgg tgtgtAAAGG 001520 001521 AGAGTGTGAG GTGGGCAGgt gtgtgagtgt gtgtgagatg ggtgtgtgtg tgtcagtgtg tgtTCACCCT GTGCATGGCC 001600 001601 ACGTAGACTT CTTGCTCTTC TTCTCTTGCC ACATGGGAGT TGACTGTCGG GGGTCCTGGG ACTGGAGGTG CCCCCTCCCG 001680 001681 GGTAACACTT ACAAGGCCAG GGGCAGATGG GGAGGCAGCC AGGGCCTCGC AGTGGTTGGG TCCCTCCTCA AGGCGCTGtg 001760 001761 tgggccaggc actctacaca ccttcatgat cacacttcaa cctccaaggt gccctgcaag gaggcgtcat gatctccatc 001840 001841 ctctgctttg ggcattgtga tccgagaggt tGCTGGTGTG TGCCAGGCCT CCAGCAGGGC ACTGGCCTGC CTGATCTCTC 001920 001921 ATGGTTTAGa ttgttactcc cattttacag atgggagaac agagccccag ggagtcccag ctgggcttgg ttattggcct 002000 002001 aggtctgtct gactccagat tcaatgctct tcccactaag gcacattgAG GTGGTGAGTT CCCTGTCATT AGAGATGTCG 002080 002081 GACACCATGT CTCTGGAAGC AGGCAAGAGT GGCCTTTGGG ATTCCCCTGA GCCACCAGTT TCTGAAACCG TTGGCTTTCC 002160 002161 CCTCTCCCAG TACATTTCCT CATTCAGGCT GGGGAGCAGG GTGGACATGG AGAGAGTGGC AGGAAGGGTG CTGAGCTAGG 002240 002241 CCCCTCACGC TGACTGCAGC TAGAATGGCT GGGGTGGGGG AAGCAGGCGG AGCTGCACTG CCCTGCGCTG CGGTTAGCTT 002320 002321 CCCAgctccg cagtacacaa acctggggca gtctgggctc tgccccctcc agcctgtggg acctgggcaa gcctgcacct 002400 002401 ttctgagcct tagtttcctc acccataaaa tcgtgataga ttggctctcc tgcTGGTGTG TGTAGGGCAG CTTCCCCCAG 002480 002481 GTAAGGACTG TAGGTGCCAG GCTGGGCGTG TGGACCCAGT GCTGCATCCA GGAGGATGTG CAGAGGCAGC GCAGGCAATT 002560 002561 CAGAGAGCCA CCGCACAGGC ACAGACTGCA AGATGGAGAC AAGCAGTGGC CAGGGGGAGA ATGTGTCCTG GGGTGGGCCG 002640 002641 GCCTGGCAGG TGCCATGAAG CTGATTTCGC TGGTGCAGGA AGTGTCCTTG CACTATTTCT CCCTCTGTGT GTGTGTGGGG 002720 002721 AGACTGTTTT CCTTCTTCCC ACCTCCAGCC AGTATCAGCC TGTAATACGA AGCCTTTTCT GTTTCTTCAT TAGCGATCAG 002800 002801 AGCACCGAAT TGTCGCTGGA TTGATCCTGA GATGCACCAG GCCCGGGATC AGGGTGGGGA CTCTGAGGCC CCCAGGAGGG 002880 002881 CAGAGGCAGG AGGCAGAGAC CAGGAAGGGA CCCAGAATCA ACCCCCTGAG CTTCCTAAGA GCATGTGGCC TTTGCGAAGC 002960 002961 TCCCTCCAGC ATACCAGGCA CTTGGGCATC CCCCTTGAGA AGTGTgtaca gccaagtggc agggggtgtg gatgcaaaac 003040 003041 cctcactgcc tgggtccaaa ttctgtctcc actgctttct gacaacggga tgtagagcaa gttactaaat gcactgggcc 003120 003121 tcagtcttct catctgcaca gaggcataac aagagcatgc agggggttgc agtgagcact caatggattc atgcacatgg 003200 003201 aaggggcttg ggacagtacc tggcatggag caagtcccta gcaaGGATGA CCTGCGTTGT TTTCTCAGGG CCGCAGGGAT 003280 003281 GTGGGTGCAC ACCATACATG GTACCTTGCA GATTTCTTTC CTCTGGCTTA GCTGCCCACG CTTCTTGCCC CAGCTTCCTC 003360 003361 TCCTGCTTTC TCCTTCCTTC TCCCACCTAC CCTAGGTATT GGGAGGATGG TCAGTCCAGA CTCTCAGGAT GAGAGAGGCT 003440 003441 GGGAGCGGCC AGCCCCGGGG CAGGGGCTCA GAGCACCCCC TGGTTCTCTT GCAGTTCTGT CCACAGCTCA CGGCAGCCTG 003520 003521 CTCAACCTGA AGGCCATGGT GGAGGCCGTC ACAGGGAGGA GCGCCATCCT GTCCTTCGTG GGCTACGGTT GCTACTGTGG 003600 003601 GCTGGGGGGC CGTGGCCAGC CCAAGGATGA GGTGGACTGG TAGGTACCAG AGGCCTGGGC TCCTGTCAGG GGCCAAATGA 003680 003681 GGACAGCTGA AGGTCAGACT GACCTTGCCC TCCATCCCTG AGTGGGGGAG ACCTTCTTTC CCCAAAGGAT CCAGCTTCTT 003760 003761 TGATGACTTG GTGACCAGAG CCTGGTCTTT GACTATGTTC TTTCCAAACT GTTTTGAGCG CTTTCTGTTG TCCATCTCCA 003840 003841 AGGCCATGGG CTTGGAAGTG TTTCAGCCCC TCCTCTCTCT AGGAAGGGAC CTTTGACTTG CTCCAAAACA CACATGGGAG 003920 003921 AGCAGTCACA CAGCTGACAC CCCACAAAGG CAAGGGCTGT GACCCCTGCC TGCCTCACAC TGGAGGCTCT GGAAGACAGG 004000 004001 ACCAtgcctc ctccatcaga ctgtgagctc ccagcagcca tggcttgtct tctgctccta tctccccaac agcaggcagc 004080 004081 accaagtttg tatcacagaa agctaaataa atacacattg actagctga |
Predicted Small Protein
Name | NONHSAT001342_smProtein_2831:3094 |
Length | 88 |
Molecular weight | 9501.6213 |
Aromaticity | 0.0229885057471 |
Instability index | 60.2195402299 |
Isoelectric point | 7.78424072266 |
Runs | 9 |
Runs residual | 0.0348111658456 |
Runs probability | 0.0473316453709 |
Amino acid sequence | MHQARDQGGDSEAPRRAEAGGRDQEGTQNQPPELPKSMWPLRSSLQHTRHLGIPLEKCVQ PSGRGCGCKTLTAWVQILSPLLSDNGM |
Secondary structure | LLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLEEEEL LLLLLLLHHHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |