NONHSAT001342

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT001342

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4129 nt

Genomic location

chr1+:20465823..20470573

Exon number

2

Exons

20465823..20466036,20466659..20470573

Genome context

Sequence
000001 TGCGAGGCAG CGTGAAGCTG GGGCCTGCTC CCCGCAGCCT CTGGAGCGCA TCTCAGACCT TCTGAGACCT ATGTTGCTGG 000080
000081 CCCCCCAGAA CCCGCAACAT GGCAGATGGG GCAAAGGCCA ACCCCAAAGG GTTCAAAAAG AAGGTGCTGG ATAGATGCTT 000160
000161 CTCTGGGTGG AGGGGCCCAC GCTTCGGGGC CTCCTGTCCT TCAAGAACCT CCAGGTCTAG CCTGGGTATG AAGAAGTTCT 000240
000241 TCACCGTGGC CATCCTTGCT GGCAGCGGTG AGTAAAGACT CCAGAGGGCT CCTCCTTCTC TCCCACTCCC AGCTTGTCTC 000320
000321 CCGTGACCTT GGGCGCCTGA GTTATGGTTC CACTGACCAG CCTAGGTTCC TTCCTGTCTC TGGGCTTCTG CTTCTTGTCT 000400
000401 CAGCCCAGCA GGCTGCACCC AATTCTGGGG CTGTTTACCC CTCCAGCCAC CTGTAAACAT GCATTTATGA GCCCTGGGGG 000480
000481 GCAGGGCGCA GGGCTGAGCA AGCATCGTAA AATGCTGGTG TTGGCTGGGC ATTTGTGTAC CTGAATGTGT ACTAGTGTGT 000560
000561 GTCCATCAGA CTGGAGTTAA TGATTTTGTG TGCAGACAGG CACAGGCATC TATGTGTGTG TAGGTGTGTC TGAGCATGTG 000640
000641 ATGATGTCTA TGTGTGCAAC ATGCATCCAT AAAGTATGTG ACAGTGTAGG CACCTGAGTG CGAGCCCATT TGTGTCTCTT 000720
000721 TGTGTGAGTG TGTGTTAATT GGGGTGTGTG TCTTCAGAGC ATGCTTATGG ATGAAGGGTG CATAGATCTG CAGGAGGGTG 000800
000801 TGTGTGTGTA GGATGGGTGT CTGTGTACTG CATAGTGGTG GGAGGTCAGG GGCTTCTTTC TGGGGTTGGT ACCCAGGGCA 000880
000881 TCATGGCTCT GGGCAGCCGC CCCATAGGAT TGTTGCGTGA GGCTCTTGAC ACAGACCTGA CCCTGCCACT CGTCCCGGCA 000960
000961 TCATTTATGT GGCAGGTGTC CCAGCTCCAT GGACCATTGG CTGGGCCTCT CACTGGCCTT GCATGCAGCC TGTTAAACCT 001040
001041 CGCCAGAACA CAGCCTGGCT TGAGGAAAAG AAATAAATGA CAAAAACCAA AATAAGGTTC CACGTGGCCA GACGTGAGAG 001120
001121 AGGGCTGGTT GCATTCAGGC AAAGTGACTT GTTATTGAGA AGACGACTGC TTGAGTTCAG TCCAAGCCAC TGGTTAGGGG 001200
001201 CAGAGCCTTC AACCCAACTG AATGCGGACT TGGATTCCTT CGCTTGGACG GTCAGTGTGG ATGTGGCCTT GGGCCAGGCC 001280
001281 CCTGATTCTC CCCTGGATGC GTTGTGTATG TGAGTGCATC TGTAATGCAC GAGGGCGAgt gtgcaagtgt gtgtatcagg 001360
001361 tatgtgtggg tgtatatcat gtatgtatgg gtgagtgtag gtgtatgagt gtatcaggta tgtatgtgtg agtgttgagt 001440
001441 gtatcaggta tgtgggggtg agtgtgagtt tgaggtgtct gggaatgagt gtgtatgcaa gtgcatgtgg tgtgtAAAGG 001520
001521 AGAGTGTGAG GTGGGCAGgt gtgtgagtgt gtgtgagatg ggtgtgtgtg tgtcagtgtg tgtTCACCCT GTGCATGGCC 001600
001601 ACGTAGACTT CTTGCTCTTC TTCTCTTGCC ACATGGGAGT TGACTGTCGG GGGTCCTGGG ACTGGAGGTG CCCCCTCCCG 001680
001681 GGTAACACTT ACAAGGCCAG GGGCAGATGG GGAGGCAGCC AGGGCCTCGC AGTGGTTGGG TCCCTCCTCA AGGCGCTGtg 001760
001761 tgggccaggc actctacaca ccttcatgat cacacttcaa cctccaaggt gccctgcaag gaggcgtcat gatctccatc 001840
001841 ctctgctttg ggcattgtga tccgagaggt tGCTGGTGTG TGCCAGGCCT CCAGCAGGGC ACTGGCCTGC CTGATCTCTC 001920
001921 ATGGTTTAGa ttgttactcc cattttacag atgggagaac agagccccag ggagtcccag ctgggcttgg ttattggcct 002000
002001 aggtctgtct gactccagat tcaatgctct tcccactaag gcacattgAG GTGGTGAGTT CCCTGTCATT AGAGATGTCG 002080
002081 GACACCATGT CTCTGGAAGC AGGCAAGAGT GGCCTTTGGG ATTCCCCTGA GCCACCAGTT TCTGAAACCG TTGGCTTTCC 002160
002161 CCTCTCCCAG TACATTTCCT CATTCAGGCT GGGGAGCAGG GTGGACATGG AGAGAGTGGC AGGAAGGGTG CTGAGCTAGG 002240
002241 CCCCTCACGC TGACTGCAGC TAGAATGGCT GGGGTGGGGG AAGCAGGCGG AGCTGCACTG CCCTGCGCTG CGGTTAGCTT 002320
002321 CCCAgctccg cagtacacaa acctggggca gtctgggctc tgccccctcc agcctgtggg acctgggcaa gcctgcacct 002400
002401 ttctgagcct tagtttcctc acccataaaa tcgtgataga ttggctctcc tgcTGGTGTG TGTAGGGCAG CTTCCCCCAG 002480
002481 GTAAGGACTG TAGGTGCCAG GCTGGGCGTG TGGACCCAGT GCTGCATCCA GGAGGATGTG CAGAGGCAGC GCAGGCAATT 002560
002561 CAGAGAGCCA CCGCACAGGC ACAGACTGCA AGATGGAGAC AAGCAGTGGC CAGGGGGAGA ATGTGTCCTG GGGTGGGCCG 002640
002641 GCCTGGCAGG TGCCATGAAG CTGATTTCGC TGGTGCAGGA AGTGTCCTTG CACTATTTCT CCCTCTGTGT GTGTGTGGGG 002720
002721 AGACTGTTTT CCTTCTTCCC ACCTCCAGCC AGTATCAGCC TGTAATACGA AGCCTTTTCT GTTTCTTCAT TAGCGATCAG 002800
002801 AGCACCGAAT TGTCGCTGGA TTGATCCTGA GATGCACCAG GCCCGGGATC AGGGTGGGGA CTCTGAGGCC CCCAGGAGGG 002880
002881 CAGAGGCAGG AGGCAGAGAC CAGGAAGGGA CCCAGAATCA ACCCCCTGAG CTTCCTAAGA GCATGTGGCC TTTGCGAAGC 002960
002961 TCCCTCCAGC ATACCAGGCA CTTGGGCATC CCCCTTGAGA AGTGTgtaca gccaagtggc agggggtgtg gatgcaaaac 003040
003041 cctcactgcc tgggtccaaa ttctgtctcc actgctttct gacaacggga tgtagagcaa gttactaaat gcactgggcc 003120
003121 tcagtcttct catctgcaca gaggcataac aagagcatgc agggggttgc agtgagcact caatggattc atgcacatgg 003200
003201 aaggggcttg ggacagtacc tggcatggag caagtcccta gcaaGGATGA CCTGCGTTGT TTTCTCAGGG CCGCAGGGAT 003280
003281 GTGGGTGCAC ACCATACATG GTACCTTGCA GATTTCTTTC CTCTGGCTTA GCTGCCCACG CTTCTTGCCC CAGCTTCCTC 003360
003361 TCCTGCTTTC TCCTTCCTTC TCCCACCTAC CCTAGGTATT GGGAGGATGG TCAGTCCAGA CTCTCAGGAT GAGAGAGGCT 003440
003441 GGGAGCGGCC AGCCCCGGGG CAGGGGCTCA GAGCACCCCC TGGTTCTCTT GCAGTTCTGT CCACAGCTCA CGGCAGCCTG 003520
003521 CTCAACCTGA AGGCCATGGT GGAGGCCGTC ACAGGGAGGA GCGCCATCCT GTCCTTCGTG GGCTACGGTT GCTACTGTGG 003600
003601 GCTGGGGGGC CGTGGCCAGC CCAAGGATGA GGTGGACTGG TAGGTACCAG AGGCCTGGGC TCCTGTCAGG GGCCAAATGA 003680
003681 GGACAGCTGA AGGTCAGACT GACCTTGCCC TCCATCCCTG AGTGGGGGAG ACCTTCTTTC CCCAAAGGAT CCAGCTTCTT 003760
003761 TGATGACTTG GTGACCAGAG CCTGGTCTTT GACTATGTTC TTTCCAAACT GTTTTGAGCG CTTTCTGTTG TCCATCTCCA 003840
003841 AGGCCATGGG CTTGGAAGTG TTTCAGCCCC TCCTCTCTCT AGGAAGGGAC CTTTGACTTG CTCCAAAACA CACATGGGAG 003920
003921 AGCAGTCACA CAGCTGACAC CCCACAAAGG CAAGGGCTGT GACCCCTGCC TGCCTCACAC TGGAGGCTCT GGAAGACAGG 004000
004001 ACCAtgcctc ctccatcaga ctgtgagctc ccagcagcca tggcttgtct tctgctccta tctccccaac agcaggcagc 004080
004081 accaagtttg tatcacagaa agctaaataa atacacattg actagctga
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Predicted Small Protein

Name NONHSAT001342_smProtein_2831:3094
Length 88
Molecular weight 9501.6213
Aromaticity 0.0229885057471
Instability index 60.2195402299
Isoelectric point 7.78424072266
Runs 9
Runs residual 0.0348111658456
Runs probability 0.0473316453709
Amino acid sequence MHQARDQGGDSEAPRRAEAGGRDQEGTQNQPPELPKSMWPLRSSLQHTRHLGIPLEKCVQ
PSGRGCGCKTLTAWVQILSPLLSDNGM
Secondary structure LLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLEEEEL
LLLLLLLHHHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -