NONHSAT001496
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001496 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3565 nt |
Genomic location |
chr1+:23243783..23247347 |
Exon number |
1 |
Exons |
23243783..23247347 |
Genome context |
|
Sequence |
000001 CTGCCTCACT GAAGCACAGG AAGGACCCAG GCCCCAGACC ATCACCCACC CCAGGGCTGG GCCCTGGGCC ACTCCTGGCT 000080
000081 CACTCCAGGG CCCCTGTTGT TTGAAGATGG TACCAAAGGC TGGAAGACTC TTGCTAGGGA AGATAACGTA AATGCATTCA 000160 000161 AAAGACAGGG TACCACATGA TGCTAGGGAA AGTGCGTCAT GACCGCAGGG TAGCAGCCTG CTCCTGTCAC TAGGGATGTG 000240 000241 AATCTGGGGA GACACTTCCC CTCACTGAGC CATCTGTAAA ATGAGAGCAT TGGACTGGGT GAGGCAGGCT GTGCAAAACA 000320 000321 CTTATACACC TTAGTCCCAT GAGGAAGGAG TATTCCCCCT GCATATTTTG GGGGGAAACT GAGGCTCAGG GGGATGAAGT 000400 000401 ACTTTGCTCA GGGTAACACA GCCAGGAAGG AGCAGAGCAA GGCCATGAGC TTTGGATTTT TCTGTTTCCA ATGTCTCCTC 000480 000481 TACCGTGCTC AATTAGATGA TGAGAAACAG TTGGTGTCTG ATGCTGGCCA ATAAGAGAAA AGAAAGCTCA AGTGGGCTGG 000560 000561 GGCTGTCAGG GAGGGCTTCA TGGAGAGGCT GTCTTGAAAA TGACAGAGGT CAAAAGAAAG GTCACTCCAA GACGCAGCTG 000640 000641 CCAGAATGGT CCAACACAGT GAGGAGTTGT GTCTGGATGG GCCAGTGGAA CGGGGGAAGT GAAGGTTGAT ATAAGTGGAG 000720 000721 GTTGAGGCAG TTTAGGCGTG ATGTACAGTC CAGCCACAGC AGGTTCTTGA GCAGGAGGGT AGCATAGTGA GCATCAGGTT 000800 000801 CTAGGAAGAA GCACCAGTTC AGCCATCAGA TGGGGCAGGA TGCCTCCCAG CTACTCCTCT CCCCGAGAAG GAATTGCCCC 000880 000881 CGGAGCGGCC CTCATTTATT CCAGGAGAAG CCAGGCCCTG CTGCTTCAGT TTCCATCCTC ACTGACGCAG ATAATCCAAA 000960 000961 GAGTCACTTC AGCTGCTTGG AACAGCAGGG TTGGGTCTTG TGCTACCTGA TTCTTAATTT GGCTGATGTC TACCCCATTT 001040 001041 CCTCCAGGCT TCTCTAGAGG TGGCAGGGGT GGGGTGGGGA GAAAGCTGCC AGACACCAAA GGAGCTGAGC CTGGCGGGGG 001120 001121 CGGGCGTGCG GGTGGGCATG AGAAATTGCT CAGGAAACCC ATCCCTGCCC TGGTCACCCT AGTCCTGGAG AGATCACCCA 001200 001201 GACATGTTGG AATGAGTCTG GGGTCCTGTC TTTTCCAATA ATGTGTTATC CTGGGGAAAC CCAGAGGGAA GTTGAGGGAG 001280 001281 CCCCACTGTG CTGTGTGATG CTACATACGC ATGCGAATAC ACCACCGGGT GGCCTTGACC CAGCCTTCTG CAAAATGGCT 001360 001361 TCTGCCATCA AACTTAAGGT GGAGAATGGT CTTGCAGCTG CCAGTTTTTC CTTCAGAGAA ACTAAGGTCA GAGTGTTGGC 001440 001441 TGCAGAAAAG GACTTGGCCT TTGTCACATA ACAGGAAAGA GAGTCAACTC CGGGCACACC CCCTCGGAGG CTAATCTCAG 001520 001521 GAGGTTGGAA CCACAGGGAT TGCAATAATC GCTGAATACT TACCATATGC CAGGTGCCAA AGCATTATCC TCTCCACTTT 001600 001601 ATGAGTGAGG AAACTGATTC CCAGAGGTGA TTCCCAGAAG ATTCCAACCA GGCCATCTGT CTGTAGTCCT TCCTTCCCAC 001680 001681 CTCCTGGGAT TTCTCAAAAT GTTTGCCATC GCCCACCTGT ATCAGAATCT CCTGGGCTAT TTATTGTTTA ACTTGCAGAC 001760 001761 TCCTGGGCGC CACCCCAACC CCCTAAATCA GAATCCCTGG GGTTGGGCCC AAGAGTCTCC ATTTTTTGAC AAGCTCCTCC 001840 001841 AGGAGATTCC TCCAGACATG GAAATCCTCA CTTGACTCTT CCCCCATAAC AAACTGCCCT GATGTCTGCA GAGAGAGGGT 001920 001921 CTGCTGTAGA CAGGGATTAA GAAAAAGCAG GACATTTTCA GATAGGATGC CCAAACCCAG ACGCAGATTA GGACCCATGA 002000 002001 AGTAGGGGGT AGAGCTGACC CTCAGGAATG TGCCCAGACA GAGCTAAGCT TTCAGGAAAA TTAGAAAGAC CCTCAGACCC 002080 002081 AGAGTCTGTC TGAGTTTAGC TTCGCAGCAT GAAGGCTGCC TTGAGAAAGC TGATATAACA AGAAGCAGCA GAAATTTAAT 002160 002161 ACTTTGGAGG GGCCCAGCAA CCCACTCAGG GCCACCCTGG GAGACCCCAC AGACCCCAAG GCTATGGTCC AGACCTGTTC 002240 002241 ACTCAACACC TGGCCAGGCG GGGCCTCCAG CTGGACCTAG AGCTACAGAT GCCCCACCAC CACTACCAAG CCCGGCTACC 002320 002321 CAGACCAAGA CACGGCTTTT CCTGGAGGAG AGAGAGAGCA AAGGCCCTGT CTCTACCCAA GACCTAACGG CCCCTGTTGA 002400 002401 AGGAGAGGGA GCAGGAGAGG GAGGAGGGAG GAGGTCACAG CCAGGACCAC ATACACTCTT GGGGGCCCTG CTGAGACTGC 002480 002481 AAGAGTCATG AATTCTAACG TTCCACAGGT GAAAGATTCC AAGATTCTAG GATTGCAAAA CCCCATCATT CTAAGATTCC 002560 002561 AATGGAATGA TTCCATGTTT CTAAGATTCC ATCACACTAT GATTCTATGC TGCTAATTCT TGAAATTTCG AGTCTCATTG 002640 002641 TTCGTTGCTG TTCCCCAGAC CTGTGGGCCC TAGCATTTTT TTAAAAGCAC AAAAAAAAAA GAGCAAGAAA GAGAGAAAGA 002720 002721 GATGGGGAGG GAGACAGCTG AAAACAGATA CTAAGAAAAG CTCCATCCCT TGGATCTGAG TTACAGATGC ACCTTGGCAA 002800 002801 GGGCCAAAGA CCCTCCTTTT GAGTGGGGTG CAGAACGTCT TTCCCTGGTA GAGTGGCAGA ATTGCATGCA TCAGGCCTTC 002880 002881 CTGGGGGTAA AAGGGGCTGG CTGTTCCAGG CTACAGCTGA GTAAAGCCCC ACACAGGCCA CAGTGCCCAC TGGCTGGTGG 002960 002961 ACCTAGGAAC CAAGCAGGGC CCCACTGGCT CAGTCTGGGG AGGGACTCAT CTGGGGTGGA ATTTCCCTCC CTGCAGCAAG 003040 003041 GAAGCTGCAG GGCCAGGAAT TTGCCTTGGG AGACCCCCAC TGAGGAATAT TTCCGAAGCA GAACCCCTTC CTATTCAGAG 003120 003121 CCAGAGTCTT AACACTGGAC AACCACAGGG TGTTGCTGCA AACTCCAGAG CCAGGTGCCT TCCCTCTGAC ATTTGGGACA 003200 003201 TAGCTTCCAT GGCCACACAG CCTTCGCCCC CTTCCAAGAC CCCCCTTGAC CTTTCTAATC TTAGTCACTG CCTTCCAGAG 003280 003281 CTGGGAGGCC ACACGGCAGA GGTGCCTGTG AATCACTCCG TCATCAGCCT GGCCGCTTTC CCCTCTGTGG AGAGGGACTC 003360 003361 TGATGGGCAG GGGGCACCAA GTTGAGCCTC TGAGGCTGGC CCAGCATAGG CCAGGCAGGG ACATTCACTC ACAACCAGCC 003440 003441 TTTTTGGACT CTAGAGAAGA GTAATTACCA CTTGGTCATG CCCAGCCCCC AAATCATAAT CATAGCTGCT ATTTCTTGAG 003520 003521 TGCCAGCAAT GTGCCAGGCA CCGTGCCCAA CTTTTTATAC ACAAT |
Predicted Small Protein
Name | NONHSAT001496_smProtein_1025:1240 |
Length | 72 |
Molecular weight | 7335.4633 |
Aromaticity | 0.0422535211268 |
Instability index | 60.2901408451 |
Isoelectric point | 11.3118286133 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0300300300301 |
Amino acid sequence | MSTPFPPGFSRGGRGGVGRKLPDTKGAEPGGGGRAGGHEKLLRKPIPALVTLVLERSPRH VGMSLGSCLFQ |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLEEEEEEEELLLE EEEELLEEEEL |
PRMN | - |
PiMo | - |