NONHSAT001952

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT001952

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2238 nt

Genomic location

chr1+:28832455..28837404

Exon number

3

Exons

28832455..28832596,28834640..28834672,28835342..28837404

Genome context

Sequence
000001 GATTCTCTAA CTGCGCATGC TTCTGCGCAC GCGCAATAGA CATTCCAGGA CTTCCGGGCA CTTCGTAAGG TTTAAAAAGG 000080
000081 ATGCTTCGCG TTTTCTCTCT CCTTTTTGGA GACAGATTCG CAGTGGTCGC TTCTTCTCCT TGGATTTGTT AAGGATTCCA 000160
000161 AGTAACTCTT ATTTGGAGAG AAGACGATCT GCACTTCGCA TTTTGGCATT GACATTTAAT TTTAGGGTCC TTTATATAGA 000240
000241 AGGGAGAGTA GGTAAACTGA TTTTTTTTTT TAACAGGGAG GGTTTGACAA TCTTTGGCAG ACTTGGAGCA AAAGATTGAG 000320
000321 GTGCATTTCA TGCCTCCttt tgagagtctt gctctgtcgc ccaggctgta gtgcagtggc gcaatcttgg ctgcaacctc 000400
000401 agcctcccaa gtAGCTGGGA TTACAAACAT AAGCCACCAC GCCCAGCCCT CATACCTCTT TTAAAAGTCG ACCTGTTTTG 000480
000481 CAGAAAGTCT GCTGTTTTTG TACTAAAGGC TTTGGAATTT GGCATTTAGC TAGGAATGCA CATTCTTTCA CCTCATTCAT 000560
000561 ACTTTAAGAA CCACAGAAGT GACTCTGCTT GGCCAGAAGG CACACTGTGT TGGTGGTTAT ATTAAAAGTC CTTGAGTATT 000640
000641 TTGCTTTTCA Tgatcttgct cactgcaact tccgcctccc aggttcaggc gattctcctg cctcagcctc ccaagtagct 000720
000721 gcgactacag gcgtgtagca ccacacctgg ctaatttttg tatttttagt agagatgagg tttcaccata ttggccaggc 000800
000801 tgttctcaac tcctgacctc gtgatccgcc cacctcagcc tcctaaagtg ctgggattac agctgtgagc caccctgccc 000880
000881 ggccACTTTT GTATGATTTC TAATGTATTT GTAATTTACC TAACAAATTG CCTAATCTGC TATGTTAATG TATTTATGAA 000960
000961 TTAAAATAAA TACGACTGCA TGTTTGTGGT TCATTTTTGT GGAGGTGGCT GTGGTGACAT CAGCCAAGAA TCTGAATGGT 001040
001041 ACTGTTGAAG GAAACTAGCA TGATAGCTTC AGTTCTAAAG GCCCTGAAAC CTAGTCTCAG GTGGGTCCCC CTTGGGTTCA 001120
001121 CTTTATATTG GCAGTTTATT GGGAAAATGG ATATTAGGTC CTGACCAATA GGACCGTAAG TCTGGGTTGA GTGCAAGATG 001200
001201 AGTTAGACCG ATTCTTTAGC TTCCTGCAGT GTAGTGGAGG AAAAATCGAT GGTAGCAACG GGAGGTTGTA TCCCTAGCTG 001280
001281 ATGAGTTGTA TGAGCCTCTA CTACCTGGCG CACCTCCGCC TGAAGATTGC CAGAATTGCT TGCCTCATGA CGTGAGTCAC 001360
001361 AATGGAAACT TTGTCAAGCC CCCTGCACTG GCTGCCAACA TAAATGTTCA GTACCCTGAA GGATGGGACT GAAGGGGGAT 001440
001441 CATCTAGAAG GTAAAGTTAC CTACTGGCAT AGGGGAGGTG GGACAGCCGT TAAGCCATTT GGAACTTGAT GGAGACAGGT 001520
001521 TTGAGGGAGG TGGGTGAGAT TGGAGTTTGG TGGACTGTAG AGCTTGCTTG CCAAGGTGTT GAGGTCAGGG TTGGTTTGAG 001600
001601 AATGGAAGCT AGTTACTAGC TATGATTGTG GGGGAACACA GCTTGATTTT TCTTACAAGC TAAGAGGAGT GAGGCAGTGT 001680
001681 TTAAGAGGGC ATGTTAAATG CAgccaggct tggtggctca cacccgtaat cccagcactt aggctaaggc aggcggatca 001760
001761 caacatctag agatcctggc caacgcggtg aaaccctgtc tgtactaaaa atacaaaata actgggcatg gtggtgtgca 001840
001841 cctgtgggag gctgaggcag aattgctgga acccgggaga tggaggttgt actgagctga gaccttgcca ctgcgctcca 001920
001921 gcctggtgac agagttaagt ctcaaaaaaa aGGCATCTTC CTAAAGCAAT TGTATTTgtg cttacctgtg ccaggcactg 002000
002001 ttctaggTAA GCACTAAGTG GGCTTTAATA CAGCATATTC CAATGGGGAA TCCCAGGAAC CAAAAGACTA ATTGTCCAAG 002080
002081 TCCACAACTA GAAGTGGCAC CTCTGCAGAA ACAAGCATCA AATTCCCTGC TCAGGAAGAA GCCAGATGAG TCAGCCCCAT 002160
002161 TCGTCTGTAT GCCCAGTCCC ATCCGTGTCC TGCTGTAACT ACATAGATCT CACCTGAGTA AAGTGATTTT TTTCTGAA
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Predicted Small Protein

Name NONHSAT001952_smProtein_2042:2197
Length 52
Molecular weight 5630.549
Aromaticity 0.0196078431373
Instability index 77.8235294118
Isoelectric point 9.69427490234
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0374688413904
Amino acid sequence MGNPRNQKTNCPSPQLEVAPLQKQASNSLLRKKPDESAPFVCMPSPIRVLL
Secondary structure LLLLLLLLLLLLLLLLLLLLHHHHHLHHHHLLLLLLLLLEEELLLLEEEEL
PRMN -
PiMo -