NONHSAT002019
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002019 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
692 nt |
Genomic location |
chr1-:29542549..29550061 |
Exon number |
4 |
Exons |
29542549..29542648,29543100..29543197,29547350..29547433,29549652..29550061 |
Genome context |
|
Sequence |
000001 GTAGACGAGA AAGTCTCTGG CCAGTGACAA TTTCTCCCTA CCTCTTCTTC CTGCTCAAAA TGATATTGAC CGTTTGATGT 000080
000081 GATTGAGTAA AAGATGAAAG ATAAGTACAA ATGATTGCTA ATTAAATGTG GAACGCAGGA AAGATATCTC AGCAGAGCTA 000160 000161 GCTAATGCCC ACCTTACACA GCAAGTATAA CTGTGCCAGT CCCCAGGGTA CTGGCCTCTT TTCCCCCCTC TCAAAAGGCT 000240 000241 CTTTCTTCTG CCTGCTTTTG TCTCCCTTGT ACTTCATATG GCATCACAGG TGTACAGCCT TGGCCTCAAA GGAGCCATTG 000320 000321 TGACCTTATC CAGGCTGGGA TCTGTTGATT GAGGACAGTG GCATCCCCTC GAGTTGCATG GCGCCATTAC ATTCACGGAG 000400 000401 GACGTGAACG AGGTATAACC AGGGAATTGT TCCAGAGGTT TCCTTGGATA TTCCTACAAC tgataacagc tgtcatttct 000480 000481 tcagcatcta ctgtACTCAA GAACCTGGAG CTAGCTGCTG TGAGAGGATC AGATGTCCGT GTGAAGATGC TGGCGGCCCC 000560 000561 TATCAATCCA TCTGACATAA ATATGATCCA AGGAAACTAC GGATTCCTTC CTGAACTGCC TGCTGTTGGA GGGAACGAAG 000640 000641 GTGTTGCACA GGTGGTAGCG GTGGGCAGCA ATGTGACCGG GCTGAAGCCA GG |
Predicted Small Protein
Name | NONHSAT002019_smProtein_164:322 |
Length | 53 |
Molecular weight | 5797.7502 |
Aromaticity | 0.134615384615 |
Instability index | 60.0903846154 |
Isoelectric point | 9.02093505859 |
Runs | 6 |
Runs residual | 0.0349847892221 |
Runs probability | 0.0345786963435 |
Amino acid sequence | MPTLHSKYNCASPQGTGLFSPLSKGSFFCLLLSPLYFIWHHRCTALASKEPL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHEELLLHHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiii |