NONHSAT002509
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002509 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1925 nt |
Genomic location |
chr1+:38676827..38679428 |
Exon number |
3 |
Exons |
38676827..38678179,38678681..38678839,38679016..38679428 |
Genome context |
|
Sequence |
000001 CGCCAACACA CTGAAGTTTC AACAAGTGgg tattcctcct tcaccatggg cacttcttcc tgcatccttt gctggttctc 000080
000081 ctccctcccc accttactcc ttgcagcgcc ctgggctcag gcctccatgt ctttcttcct tacactctct cccttgtgag 000160 000161 ctcatccatc tgtatgctga tggcttccac atttctaatg ctagcctcga ccctcttccc agaactccag actcctacaa 000240 000241 gcagttgccc attcaaactc tccccttggg tgtttaatag atatatcaga tctaatatgt ctaataatgc atctcaaatg 000320 000321 gaattcctca tcttcccctc tgcaaacctg ttccccaccg cccctacagt cttccccact tggttaatga tggctccatc 000400 000401 cttctggtga caccttggag tcatccttga ttctgctatt tctttcactt caaataccta aaccatcagg aaacccggac 000480 000481 agctccacct tccacctctg ttagaacctc agcacctagc catcccccat cacctccccc actcccacca ccctagcata 000560 000561 aggcaccatc acatcttacc tggactcttg cagtagccta ctaattgctg tccctgctgc ggtacttgac ccctatagta 000640 000641 atgctctaca tagctgccag gatgatccct ttaaaacaca aacactagac ccagtcacac ctgcttataa tcctccaaga 000720 000721 ggcaaagtct ttgccaaggc cacaaggccc tgtactacct gaacctcccc gcttgctaag acctccctct cttactctgt 000800 000801 gccagccacg cctaccttgg tgctttccgt gaacacacca ggggcacact cccaccttgg atcttcatac tggctgttca 000880 000881 ctcttctcat tcctcacctc cctcagacct ctgctcagag gtcacctttg ctgtgaggct taccttgact gtcccattta 000960 000961 aaagtgcacc ccgacattct gcatggtggc ttccctcttc cattgtgcat gtcctcttct tacatactgg agtttcttga 001040 001041 gccttgtgtt tgctgtcttc tccctccagc attatccgtt ttgtgccctg cagcattccc acagcaacca gcacagccct 001120 001121 tgTGTGGTGG AGGTGCCGGG CATACTGAGA TGCATCTGTC AGCATCTGCC TCCTGGTACC TTGGGCCTGC ATGTCTGGCA 001200 001201 GGCAGGTAGA AGAACACGCT GGCCATTTCA ATGTTAAGAC AAAgaggtag agaaggctgg atgaaggagg tgatgactga 001280 001281 accatatcct gaggcagctg gggtttccag gaagaggaca gagagaagga cattcaggtg gaggagccag cagatgtgac 001360 001361 aaccagtgca cagagagatt aactaacttg ccgtccagtg ggcatgtggt ggagcccagg gtgaaaccca ggcagtctct 001440 001441 aaagcattgc cttccaacat gcaATGGAGT GTGAAATGCG GAAGCCATGG GGAAGCACAG GAAATCGGCC ATCTCTTGGA 001520 001521 AAACCCCAAA CCTCAAGGCC ATACACTCCT TGTGGCCAAG TGAGCATCTT GGCAACTTCC CGGCTTTTCC AAAGAGAACT 001600 001601 AACTCCTGCT GGGGGCCCCC CAAGTCACCC CTCATGGCCC TTACTTCTAG TGCTCTGGAA ATGGCTGAAA CCAATGGATT 001680 001681 AACTTGCTTT CCCTATTAAA TATTTACATA AACACGCTCG GGAAGGTGTG TGTAAGTTAT CAATAATGCA AGGCCAGCCT 001760 001761 AGGCTCGGTG AGAGCTAAGA GACCCAAATT GTATCATCAT AATCCATTAT TCACATATAA TGCGTCTATT CTCCTCCATT 001840 001841 AGCGCAGGCA GGAAATGCCC CTGAGTGCCG GGCAGGGCTT TGGAAAGCGC AATAAATGGC GGACAGACAC ATGGCGGGAG 001920 001921 GGCGG |
Predicted Small Protein
Name | NONHSAT002509_smProtein_173:409 |
Length | 79 |
Molecular weight | 8933.4405 |
Aromaticity | 0.166666666667 |
Instability index | 65.5820512821 |
Isoelectric point | 7.95440673828 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.0596184419715 |
Amino acid sequence | MLMASTFLMLASTLFPELQTPTSSCPFKLSPWVFNRYIRSNMSNNASQMEFLIFPSANLF PTAPTVFPTWLMMAPSFW |
Secondary structure | LLHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLEEEEELLLLLL LLLLLLLLHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTT TTTTTTTTTTTToooooo |