NONHSAT002509

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT002509

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1925 nt

Genomic location

chr1+:38676827..38679428

Exon number

3

Exons

38676827..38678179,38678681..38678839,38679016..38679428

Genome context

Sequence
000001 CGCCAACACA CTGAAGTTTC AACAAGTGgg tattcctcct tcaccatggg cacttcttcc tgcatccttt gctggttctc 000080
000081 ctccctcccc accttactcc ttgcagcgcc ctgggctcag gcctccatgt ctttcttcct tacactctct cccttgtgag 000160
000161 ctcatccatc tgtatgctga tggcttccac atttctaatg ctagcctcga ccctcttccc agaactccag actcctacaa 000240
000241 gcagttgccc attcaaactc tccccttggg tgtttaatag atatatcaga tctaatatgt ctaataatgc atctcaaatg 000320
000321 gaattcctca tcttcccctc tgcaaacctg ttccccaccg cccctacagt cttccccact tggttaatga tggctccatc 000400
000401 cttctggtga caccttggag tcatccttga ttctgctatt tctttcactt caaataccta aaccatcagg aaacccggac 000480
000481 agctccacct tccacctctg ttagaacctc agcacctagc catcccccat cacctccccc actcccacca ccctagcata 000560
000561 aggcaccatc acatcttacc tggactcttg cagtagccta ctaattgctg tccctgctgc ggtacttgac ccctatagta 000640
000641 atgctctaca tagctgccag gatgatccct ttaaaacaca aacactagac ccagtcacac ctgcttataa tcctccaaga 000720
000721 ggcaaagtct ttgccaaggc cacaaggccc tgtactacct gaacctcccc gcttgctaag acctccctct cttactctgt 000800
000801 gccagccacg cctaccttgg tgctttccgt gaacacacca ggggcacact cccaccttgg atcttcatac tggctgttca 000880
000881 ctcttctcat tcctcacctc cctcagacct ctgctcagag gtcacctttg ctgtgaggct taccttgact gtcccattta 000960
000961 aaagtgcacc ccgacattct gcatggtggc ttccctcttc cattgtgcat gtcctcttct tacatactgg agtttcttga 001040
001041 gccttgtgtt tgctgtcttc tccctccagc attatccgtt ttgtgccctg cagcattccc acagcaacca gcacagccct 001120
001121 tgTGTGGTGG AGGTGCCGGG CATACTGAGA TGCATCTGTC AGCATCTGCC TCCTGGTACC TTGGGCCTGC ATGTCTGGCA 001200
001201 GGCAGGTAGA AGAACACGCT GGCCATTTCA ATGTTAAGAC AAAgaggtag agaaggctgg atgaaggagg tgatgactga 001280
001281 accatatcct gaggcagctg gggtttccag gaagaggaca gagagaagga cattcaggtg gaggagccag cagatgtgac 001360
001361 aaccagtgca cagagagatt aactaacttg ccgtccagtg ggcatgtggt ggagcccagg gtgaaaccca ggcagtctct 001440
001441 aaagcattgc cttccaacat gcaATGGAGT GTGAAATGCG GAAGCCATGG GGAAGCACAG GAAATCGGCC ATCTCTTGGA 001520
001521 AAACCCCAAA CCTCAAGGCC ATACACTCCT TGTGGCCAAG TGAGCATCTT GGCAACTTCC CGGCTTTTCC AAAGAGAACT 001600
001601 AACTCCTGCT GGGGGCCCCC CAAGTCACCC CTCATGGCCC TTACTTCTAG TGCTCTGGAA ATGGCTGAAA CCAATGGATT 001680
001681 AACTTGCTTT CCCTATTAAA TATTTACATA AACACGCTCG GGAAGGTGTG TGTAAGTTAT CAATAATGCA AGGCCAGCCT 001760
001761 AGGCTCGGTG AGAGCTAAGA GACCCAAATT GTATCATCAT AATCCATTAT TCACATATAA TGCGTCTATT CTCCTCCATT 001840
001841 AGCGCAGGCA GGAAATGCCC CTGAGTGCCG GGCAGGGCTT TGGAAAGCGC AATAAATGGC GGACAGACAC ATGGCGGGAG 001920
001921 GGCGG
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Predicted Small Protein

Name NONHSAT002509_smProtein_173:409
Length 79
Molecular weight 8933.4405
Aromaticity 0.166666666667
Instability index 65.5820512821
Isoelectric point 7.95440673828
Runs 9
Runs residual 0.0182926829268
Runs probability 0.0596184419715
Amino acid sequence MLMASTFLMLASTLFPELQTPTSSCPFKLSPWVFNRYIRSNMSNNASQMEFLIFPSANLF
PTAPTVFPTWLMMAPSFW
Secondary structure LLHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLEEEEELLLLLL
LLLLLLLLHHHHLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHHHHHHLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTT
TTTTTTTTTTTToooooo