NONHSAT002534
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002534 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1633 nt |
Genomic location |
chr1+:39337899..39341892 |
Exon number |
2 |
Exons |
39337899..39339251,39341613..39341892 |
Genome context |
|
Sequence |
000001 CATTCTACAC CCTTGAATAT CCCAGTGAGT TGAGTGACAC ATAGCAGGCA TTCAAATTAG TGCTAAGCCA ATAAAGTAAA 000080
000081 CTGTACCCTA CCCCTTGAAA TCCTCCTGTT TCCAACACTT TACTCATCTA CTTAACTTAG ATCTTGAAGC CACGAATGAA 000160 000161 GAGATACAGC GTTAACAGTA AGCTTTCATT TTAAAAAGTG AAAACAATGT AACCACCTTG ATATGCCCTC GAGCTCTTTA 000240 000241 AGCTGTAATT CTACTTTATG AAATATACAC AAAATAAGAA TTGACACAGA CAGACTAAGG AATGGGGGCT GAAAAGCCAC 000320 000321 AGCCAAATTC GCTATGAATC TCCTACTTTG GGGATTAGGC TCACTCAGCT ACTTCATAGC CCACTTGGAA ATTCGGTCAT 000400 000401 TTTTCCAGTT GCTCTTTGTT GGAGGGAAAC TTTCTTAACA AGATTCTGAG GACTCCATAA AAACCGTAAG GTGGGAGGAA 000480 000481 TTGGGATCTG AAGGTCCTTG GCAAACATGT CCACTGCGGC TGCTGGAGGC AAAGCAACGG AAGTTGAAGA GACTTTGCAA 000560 000561 CAGCTGCAAG AGTTTCACTC CCGGTGCGGA GAAGGGTAGC GGAGCTAGGC TACCCCACCC GGGCGGCGTC CAGCAGCCAG 000640 000641 GTCCCTGCTG AACCCCGAGG CCCACCTCGC TGGACCCCGG ACGGGCCCCA TCTGTTTCCC CTCCTTCCCC ACGCTACGGC 000720 000721 CCGCTGGGGA ACGGGGCAGC GCCGGGGAGC ACGACGAGGG CACGAGGTAC CCTCTCCTAG CCCAGGCTCA CCCTTGGTCA 000800 000801 GCGTGTCCAG CACCCCCGAC TTCTCCAAGT ACCTCCGGAA CTGCTCACGC TTCGAGTCGG CGGCCTGAAG AGACACCGGG 000880 000881 GGTCAGTGGC CAGAGCCCGG GAGCCGAGCA GGAAGAAGGC GCTGGGAGTC CGGCAACCCC GCCTCCGCCT CACTACCTCG 000960 000961 GGGCCCTCCC GCCCAAACCT GCGCGCGCGA CCCCACTCCC ACCCAGAGCC GACCAGCGGC TTGCTACCGC CCGCATGCCC 001040 001041 CCAGCCACGC CGCGCCCCCC TCACTTTGTA ATGGGCCATA GTGACAGCGG CAGCGGCGTA GCTGGCGCCG GAGACCGCGA 001120 001121 CTGGCGGGTT GGGAGCAGCA CTGCTCATGC GCGGAAGGGG GCGCGCGCCT GCGCACTTGC AAACCACCGG CCGGGATCGC 001200 001201 CGAGGTGTGG CCTGTTTTCA TGGCGACCAG GACGCTCTGC ATCCCCAGTA GCAGGCTGAG CCGAGGGAGG CTGCGTATGC 001280 001281 CCGCCCCTCT GGCTGTCGGA GCCGCACCTC TTCCTCTTCC GGCCCCCGTA GCAATTAGGT TTCTTTGCAG GAGATGAAGC 001360 001361 CAGACTGCTC ATCATTCCAG ACATCTTCAG CTGCTACACC CAGAACAAGC ATTCGAAATA TGAACAGGAT GGTGAGCCAG 001440 001441 ATCTTTCCAA TCATGGTGGA GTGGATGTGA ACTTCCTCCA GAGTATCTCC AAGGAGATTC CAGTCCCCCA TGTTTATTTA 001520 001521 GTCAGCCATC TTAGCTCTGA TCCACATCAA ATAAGAGGCA GATAAATTCT TCCATTCTGA AGGGAGCACT ATTTCTTAAA 001600 001601 GCAAACCTAT GGTGAAAATA TAACAATATG TCA |
Predicted Small Protein
Name | NONHSAT002534_smProtein_1034:1258 |
Length | 75 |
Molecular weight | 7587.4268 |
Aromaticity | 0.0540540540541 |
Instability index | 52.7837837838 |
Isoelectric point | 11.7040405273 |
Runs | 14 |
Runs residual | 0.046539222149 |
Runs probability | 0.0466601054836 |
Amino acid sequence | MPPATPRPPHFVMGHSDSGSGVAGAGDRDWRVGSSTAHARKGARACALANHRPGSPRCGL FSWRPGRSASPVAG |
Secondary structure | LLLLLLLLLLEEEELLLLLLLEELLLLLLLEEELLHHHHHHLLLEEHHHLLLLLLLLLLL EELLLLLLLLLLLL |
PRMN | - |
PiMo | - |