NONHSAT002542
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Contents
[hide]Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002542 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1533 nt |
Genomic location |
chr1+:39534023..39535555 |
Exon number |
1 |
Exons |
39534023..39535555 |
Genome context |
|
Sequence |
000001 gattgctcca ctgcactcca gtctggatga cagagagaga ctccatgtca aaataaataa ataaataaat aaataaataa 000080
000081 ataaataaat aaataaaATA GTAGCTCTgg ttgagggcag tggctaatgc ctgtaatccc agcactttga gaggccaaga 000160 000161 caggagcatc gcttgagccc aggagttcaa gaccagtttg ggcaacatag ggagacccca tctctacaaa aataaaaaaa 000240 000241 ttagccaagt gtagtggcac atgtccatgg tcccaactcc ttgggaggtg ggaggatcac ttgggcctgg gaggtcgagg 000320 000321 ctgtggtgtg tcatgattgc atcactgtat tccagcctgg gcaacagagt gagaccctgt ctcaaaaaat aaaataaaaT 000400 000401 AGTAACTCCC AGTGTCATGT TTTTCTATTT TATTCTTCTT CCTAACACTT ATTAATAACT GCATTagaca gaaaacaaac 000480 000481 aggtaaacaa atgagctaca tgatgacaaa gtgatcaaag ttatgaagaa aataaagcaa ggcttaaagg agggggctac 000560 000561 tttggatggg aggtcaaaaa gggcctcttt gagaaggtga cttctaagat gaattttagg tgatgaaaat ggcaccaatc 000640 000641 atgcaatgat tttagggaat tccaagcagc cagaacagct ttgcagagtc ccaaagtggg acggaaattc acttattaga 000720 000721 ggaacagaaa gaaggtttga tttgctagaa tccagtgagc aagggggtcc tggagcacga gtcagatcat ttgaacatta 000800 000801 tggtccattg aaaagagtgt atattttagt gtaagtgcat attggaaCTG TGTAGGTGAC ATGGTTTATG Gttttttttt 000880 000881 tttttttttt ttgagatgga gtttccctct tgttgcccag gctggagtgc aatggcttga tctcggctca ccgcaacctc 000960 000961 tgcctcctgg gttcaagtga ttctcctgcc tctgccttcc aagtagctgg gattatgggc atgcatcacc actcccagct 001040 001041 aattttgtat ttttagtaga ggtggggttt cttcatgttg gtcaggctgg ttgcgaactc ctggccttag gtgatccgcc 001120 001121 tgcctcagcc tcccaaagtg ctgggattac aggcatgagc cacggcgccc ggccCTacct taggtaatcc gcccgcctca 001200 001201 gtctcccaaa atgctgggat tacaagtgtg agccaccgca cccagccAct gatctatgtt ttaaagaatt cactcttggc 001280 001281 tgcagtatgg attgaaatgg gggagggaga aagaatggaa ataggccatt cagaaggctg gtgcagttgt ccaggtgatt 001360 001361 gatggcagtg cttggaccaa gatggtgaca gcaagataga agaaatgggt gaattcagga tacattatgg aggcagtttg 001440 001441 tcagaactgg ccgataggga taagaggaat gagagaaaga aaaatcaaga atgacttctg gctgggtgcg gtggctcacg 001520 001521 catgtaatcc cag |
Predicted Small Protein
Name | NONHSAT002542_smProtein_260:391 |
Length | 44 |
Molecular weight | 4721.6186 |
Aromaticity | 0.0697674418605 |
Instability index | 50.876744186 |
Isoelectric point | 10.3101196289 |
Runs | 6 |
Runs residual | 0.0177684870656 |
Runs probability | 0.0404522169229 |
Amino acid sequence | MSMVPTPWEVGGSLGPGRSRLWCVMIASLYSSLGNRVRPCLKK |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEHHHHHEEHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |