NONHSAT002711
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002711 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1476 nt |
Genomic location |
chr1-:41972263..41974050 |
Exon number |
2 |
Exons |
41972263..41972274,41972587..41974050 |
Genome context |
|
Sequence |
000001 CAGAAAGTGA CTCCTCCAAG TCCCAGGAGG CCAGGGCTTT TCTCATCCTT GCCTTTCAGC CCTAACCCAT GGGACTGCCC 000080
000081 ACGGATTGGA GACTTCAAGG GCTGAGGTCT GGGAGCTGCA TAAAGGGCAT TGCTTCAGCC CAGGTTAGAA ATCTGCCTGG 000160 000161 GCAAGCTCTT CCTGCCCCAG ACCTACAAAG CAGCAGACCG GGGGCTCTGG TGGACTAGCC CCTGACATTG GTGGGGGGCC 000240 000241 CCACACCACT CCACCCCACC CTGCCTTCCA GCTCTCCTGG GCATTTTTCT CCCTGTACTC AAACAGCCTA CCCACCCAAG 000320 000321 GTTTCCTCCC TGGGCAGCCT AGCAATGAAC AGTGCAGCCG GCAGGGCAGA GGCCCGGCAG TCACCGGGCC CGTCAGGCTC 000400 000401 AGGCAGAGAA GCCACAGGGG CCAGGAGTCA CTGGAGACTA TTTCTAAATG ATGGGGGTAA ATGCACAAAT AGAATCTCAC 000480 000481 CAAAGGGCTG CCTCCACATT GATGCCGTGC CCAGAGGGAC AGAACCAATG CCACCAGCCT GGGTATATGT CACTGGGCAC 000560 000561 AGCTCTAACC CCCTCCTCCG GACTCTAGTC CCGCTCCTCT GCGCACAGAG CCCCCAGCCC ACAGGTACAC CTTCATGATT 000640 000641 TGGAGAAAGA CGCTCGCCCC ATGCACGCCC TCCTCTGGGC CTTCTGCCCT GCTCCCAGTC ACTTCCAAGC TTCCTGTTTG 000720 000721 CCTGTGATGT TATTGTGCCT GTTGAGGGAA GCAGCAGAGG AGGCAGTGGC TGACTTGGCA CAGATGCCTG CTACGTGCTC 000800 000801 TGTTGAAATG CGCGGGGTGG CCATTCCTCG GTACAGACTA GTCCTGGTCC TTGGGTGTGG GCAGTGGGGG AGGAACCAAC 000880 000881 TGGTCGAGGT TTCAGAGCCA AACCTTGCCT TTGGTTGGTG AGTCCTTGCC CCCCAGGCCT GCGCTCCACG ATGCCTTTCA 000960 000961 CCCTTGGCAA TCTCAGGGCC ATCCTGGGTA GTAACCCCAC TCCTCTCTGC TCCCGCCCGC ACCTGTGGCT CTCACTCTGG 001040 001041 GCTCAACCCC TGCAACCCTC CAGGAGCCCG ACAGCAGCCA GCTGCCTGCA CTGTCGCCTC CGTAAGCTCC AACTTCCAGA 001120 001121 CCCAGAAGTC CCTCTGCTTC CCTCTGTTGG AAAAAGCCTA AAAGAATTAG CTTCCAGATT CCTCTAGCCC CTGCTCCATT 001200 001201 CCCACCCAGT CCTTCTGAAG AGGAATGAGC AATACATCTG AGCTGGATTT CTCTCTAGTC CTTTCTCCAG ACAAATCCTT 001280 001281 CTTAAAGCAA AAGTCCTGGC TGAGCACCTG TCCTTGGGGA CCGATCTGCC GTGTGACCAG GGGAAGAAAG TTCCCGAAAG 001360 001361 CCTGTTCCAC CAATTCTGCT TCTGTGTTGT GAATCCAGTC TGCTTTCCAT TAGAAAACCG CTTCGGCACT TATGGTCACT 001440 001441 TTAATAAATC TAGTATGTAA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT002711_smProtein_344:637 |
Length | 98 |
Molecular weight | 10187.4138 |
Aromaticity | 0.0412371134021 |
Instability index | 64.4639175258 |
Isoelectric point | 9.87872314453 |
Runs | 15 |
Runs residual | 0.0231004200076 |
Runs probability | 0.0332037920273 |
Amino acid sequence | MNSAAGRAEARQSPGPSGSGREATGARSHWRLFLNDGGKCTNRISPKGCLHIDAVPRGTE PMPPAWVYVTGHSSNPLLRTLVPLLCAQSPQPTGTPS |
Secondary structure | LLLHHHHHHLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEELEELLLLEEEELLLLLLLL LLLLEEEEEELLLLLHHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |