NONHSAT002975
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002975 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3878 nt |
Genomic location |
chr1-:46494559..46498427 |
Exon number |
1 |
Exons |
46494559..46498427 |
Genome context |
|
Sequence |
000001 ATTCAGGGAC CATGCAGGCA GCACGCCCAG CACTAACCTT CAGGATCAGC TCTACCACCT CCGTGTGCAC CAGGCCATGC 000080
000081 ACAGGTTCCC CATTGACATG GGTGATGAGG TCACCTTGAC GAAGCCCTGC CTCACTGGCC GGACCTCCAT CCTCCACGTG 000160 000161 CTGTGCCAGG AAGAGAACAG TACTCAGACT GGAGCCTGAA CACGAAGTAT GGGGCCTGGT TCTGGACATT AAGCTGTGAG 000240 000241 CCCCTTCACC ACCACCCTTT GACCCCCGAG CAGGGACAGA TGGGCTCCAC AAAGGGGAAG CTGGAAGGAT GATGAAGCAG 000320 000321 GGAGACAGCA GGTCTGGATG GTCAGACATA CCCACACCAT ATGGTGCACG GTGTAGACAT CGGAGTCACC CATGTAGACG 000400 000401 CGAATGGCCC GCAGGGTGAA GCCATACTTC TTGCCAGCTC GGTGGATGAT GATGGGAGGC CTCATGCTGC CAAGGGCTGG 000480 000481 CAAGAAGTCC CTGCTTGGAG AAGAGTCCCG GGATGATGGG TTGGACGACT GAGAATGTGG GGACATGGGG CTGGCCAACG 000560 000561 GGGAGCAGGT GTGGTGTTCT GGAGAAGGAG AAGCCAGGAC TTAGTGGGTC AGAGGGCTTT GGCCTGGCCC CTGGTCCAGT 000640 000641 CTGTTGATGT CAGCACAACT CTAGTCACAG ACAGAGCCTG AGCCTAGGTC CATTTTCCCC ACAGCCCCTG ACCTGTGAAG 000720 000721 CCCTCTCCCG TGTCCAGACC CCAAGAGACG GTGGTGGTGA TGAGAAATGG CAGCTAGCAT TTATGTGTGT ATCAGGGACT 000800 000801 ATATAAGCTT GTCATATATA TTTAAATGTC ACAACCTATC AGCTGGCCTC TATTATATCC ACATTTTTGG ATAAGAAACT 000880 000881 TGAGGCTTAG AGAAGTTAAG CAACTTGCTC AAGGTCAAGA GCCTGTTAGT GATGGAGCCA GGATTTGAGT GTGAGCTCTC 000960 000961 TACCCCAAAG CCTGCACTTG TGACATGGTG CTGTCCTGCT TTCTGGCACA TGTATACACA ACCCCAGACA CCAATACACA 001040 001041 CCTTCAGAGA CCACAGTCAG ATCTGTGCTT AACACACACA CACACACCTG CCACGTGCAG AACCCTCCCA AGGCCTAGAG 001120 001121 ATTACAAGGC CCTTCCTGTG AGTTTTATCC CAGCTCCCCA GGGGCCTCAC CCGAAGGAAT GAGGAGTGAG AGGGCTGTGG 001200 001201 CTGAGGCGGA CTTGATCACT TTGTTGACAG GGCGAGCAGT GCGCTTCTCT GTTGAGTCCC CAGAGAGCAG CCGGTGGCGG 001280 001281 GCCCTACGCA CAGCCAGGTC ACTGATGGCC TTGGCTGTGG CTCCCTCAGC CAGCTGTGAG GTCCCACGGC CTCGGGTCTC 001360 001361 CATAGCTGTA GGCCCAAGTA AGCAGTGAGA CCCGCGATGC CGCTGAGCCT CCCTGCCCTG CAGTATCCTC CAGCTTAGGT 001440 001441 CGTTTGGCCG CCCACTGGGC CATACCTGGA CTGGAACCAC TGCTCCGGCC AACAGCTTCC TCATCCAGCT TTGGCCGCTG 001520 001521 CTCCCCTGAG TGTTCAGTGA CAGGCCCAGA TACCCCCTCT CCAGATGGGG GTGTCAGGAC CCATATACCC TCCTGTGGTT 001600 001601 GCCTCCTGAG GGTGCTGCTG GCCTCCTCAG GGCCCTCCGG GAACCGAGGC GCATCCAGGA GGCCTGAGCA GCGGCGTCGC 001680 001681 ACTGTCATTG GAGGGCTTGA GTCACTCTCT GTGTGGGATG ACTCAGACAC CGACAGCCGC TTCCGTAATC TATGAGACAC 001760 001761 AAGGCCTGGG GTGAGTGACC CAGGTGGTCC CCCTCCTCCT GCCAGGTCTC CTTAGGGGCA CACAAGGGTT ATAGTAACAG 001840 001841 AACTTTCCTC CGCAGACATT CCTCCAGGAG CCACCCTTGT GAATGCCCCC TCCCTGCCAC CTGCACTCCT CCCTGGCATC 001920 001921 GGAATCTCTC CCATGATCTG TGACAATGCA GGGATAGCTG TGTCGCCCAC CCTGGGTGAA CTCTGGGTGC TCACATCTCA 002000 002001 GGGGAGCCAA TCACCCAGCT CCGGTCTCGG CCTTTGAGCC CTGCCAGGCC ATCTGAATGG TCCTCCTTCT CCTCACTCAG 002080 002081 GCTGCGCTTG GTCGGGGGTG GTGTCCGGCG CTCCTCGAGC AGTGAGAGCC GCTCCATGCT GCTGTACACC TGTGGGCACA 002160 002161 GGGGATGCGC TGGGGATGGG CTCTGGCAGC CGTACCTCCC AAGTGGCATA AAGCATCCTT GGCATCGGAA ACCTAGGAAT 002240 002241 TTGAACCAGT CGGTTCCATC CCTCCTTCAC ACACCCCTGC TGAATATTTG GGGAAGGAGT TATTCCACTG ATCTGACCTG 002320 002321 GCATCTCATG TCAGGGACAG CAGTGGTTCT AGAAGCACCT ATATATAGCT ATATGTAGCC CCAACCCTTA GCTCCTCTTT 002400 002401 TTCTAGAGGT GGCCCCAACC CCAACTCCCT GAGCCTGCCC CAGGTGTGCC CTTTGACAGG CCCTCTTCTT CTGATCCTCC 002480 002481 AGCCTGTTCT GCCCATTCTG GGCCTCCTCA GTCACACCTT GTTGAACCTT GGAGAGCAGG AAGAGAACTG GCGGATCTCA 002560 002561 AGGCAGCCAT CCTCACTCAC TTCTTCCTCA TCCTCCGAGT CCATGTGGTG GTATCGCTCT GAGCGGGCTG GGCCAGACAT 002640 002641 AAAGGACACT TTCCTTCAGA GCCCTGCTGG TGGCCTCCTT GTGACCCCAT TAGATTTCAG CAGAGCCCTG AGAAGTTGCT 002720 002721 CCCAATGCAA TTTCAGTGTG CACAGGTGTT TCTAGGCAAA CAGGTAGGAC CCATCCTCCA CCCCACCCAT CGGTGGCCTT 002800 002801 ACTGTCAAAA TAGCTAGTAT CATCCTCTGA CTCCAACTGA GGAATAAATT CAGCCTTCTG GCGGAGAAGT CCTGTCCAGT 002880 002881 CCAGACCAGT AAAGAATGGG TGCTGCTTCA CCTCATAGGC ACTGCCTGTG GACAGGGAGG ACATGGGCAA GGGGGTAGGA 002960 002961 TGAGCAGCAT GGAGTCTAGG TCAGCAAATC TAGCAAGAAG CCAGACCTTC AGAAGCTATA CCTAGGGGAT CAGCTCAAGC 003040 003041 ATCTTCCCTT TTCTGCCTAC AGAGCAGGGC AGAGTTTCAG GATCCAGAGG GGCTGCCCGT AACCGAAGCC TGAACCTCCA 003120 003121 GGGTACATGA CTCAGCCTCC CTTACCCCTT TTCCAAGTAG TGAGAAAAGT TAGCAGGGCC TGCCCTACCT GTGCCAAGTC 003200 003201 TCTCCAGAGG GTTCTGGTGG AGCAGTTTGG AGGTGAGGTC CTGGGCGTCT GGGGGCAGTG CCTCATCACC CTCAGGCCAC 003280 003281 ACAATCTCAT CTGAAGTCAT CAGGGGTGAG AGGGAAAGGA GAAATTGTGG GTAGAGTGGA GAGATGCAGA AGAGGGTCCC 003360 003361 AGAACAGTGA AAGGAAAGGA GGCAAAAAGG ACCCAGCCTG GAGCCCCTGA AAGCCTTGCC TGGGACCCCA GTCCTTAAAT 003440 003441 TCTATAGGTT CCTAGACCAT AGCTTGATCT TTGATCCACA GCAGGCACTG CAAAGCTCTA GCTCACCCTG CTTTTATACT 003520 003521 CCACAAAACA TACACAGACG TACCCCTCAC ACTTATGGGA TGTGCACATA CACAGACAGG AACACCCAGG TGTATATGAG 003600 003601 AGACCAGGTG TCTATGAGAG ACATGTGAAG CCCCAAGGGA CACAGTGTGC ACATGTATGT ACATGCAGAA ACACAGAGAC 003680 003681 ACCCATCCCC AAAGCAGCAG ACATCACAAA CACACATGAT GAGTTCAGAA CAAGAGCTCA CAGGCCTCAC GAGCTGCCTG 003760 003761 CATACATCAT ATTTGTGGAT TCAGACTCTG TTTCCCCACT GGGCCAGGGG CATAGTACCT ACCACTGACA CCTGCCCAAA 003840 003841 GAGCTCCTCC GGAGTATCTC CAAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT002975_smProtein_2135:2377 |
Length | 81 |
Molecular weight | 9105.4504 |
Aromaticity | 0.1125 |
Instability index | 49.23375 |
Isoelectric point | 9.13873291016 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.02079002079 |
Amino acid sequence | MLLYTCGHRGCAGDGLWQPYLPSGIKHPWHRKPRNLNQSVPSLLHTPLLNIWGRSYSTDL TWHLMSGTAVVLEAPIYSYM |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLHHHHLLLLLLLLH HHHHHLLLEEEEELLEEELL |
PRMN | - |
PiMo | - |