NONHSAT003132
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003132 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2275 nt |
Genomic location |
chr1-:48844751..48847025 |
Exon number |
1 |
Exons |
48844751..48847025 |
Genome context |
|
Sequence |
000001 ATTTTTACCA AGTTTCTGGG TGATTCTTAT GCATCTCTTT TGCCATCTAT CTAAGGATTC ATAACTGAGA GCCACTAGTA 000080
000081 TAGACTATGA ATATAACACT TATATAGATA GGGCTCTTCC TGTATAGCAG GAGTCCCCAA CCCAGGCCAC AGACGAGTAG 000160 000161 TTGTCTGTGG CCTGTTAGGA ACTGGGCCAC ACCACAGGAG GTGAGTGGCA GGTGAGTGAG CATTATGGCC TGAGCTCCAC 000240 000241 CTCCTGTCAG ATCGGTGGCA GCATTGGATT CTCATAGGAG CACGAACCCT ACTGTGCTGT GCATATGAGG GATCTAGGTT 000320 000321 GTGTGCTCCT TGTGAGAATC TAACTAATGC CTGATGATCT GAGGTGGAAC AGTTTCATTC TGAAACCAGA CATCCTCCCC 000400 000401 GCCCCCCACC AGTTCGTGGA AAAATTGTCT TCCACAAAAC TGGTTCCTGG TACTGAAAAG GTTGGGGACT GCTGCTGTAT 000480 000481 AGTGTTTATA TATAGAGTTG TTCCTTTTTT AAGGCCCTCA CTAGAGGAGA GGAGGCCTGG AATAATTAAC TTAGTCCAGT 000560 000561 CTCATCCTAA CATTTAAAAT TTATGCAAAC ACATACACAT GCACATTGGT ATTTGTTCTA CACACAAATG TACACAGTAT 000640 000641 GGCAAGGACC TATTGATCTT GCTTATTGAT AATAATTGGT AGTACCTAGC ATATTATCTG ACATATAGTA GGAATTCCTA 000720 000721 ACATATGCAT ATTATGTGAG TGGACTATTA AGGGAAAACA AGTAAACCAA ATCTATACAA ATATAGAATG AAGAGCAAGT 000800 000801 ACTAATCTTT ATCCTAAGGT GGCTATAATC CTGCTATAAG TTGGCTGGTC CATTTAAAGT CAGGTATTAA GAGCCCTCTT 000880 000881 TTCCAAATGA ATTCCACCAA AAACTGCATT TCAACCCCTT TAATTCCTTT CCACTCTCAT CGCTGGATTC CTTAATATCA 000960 000961 GGGCTTCCCT TAGGGGATAG TAGGTGGTAA GTTCACAGGA TTATTTTTGT ATTCAAGAGG TAGATTGTCA TATAAATATA 001040 001041 TCTGCAGCAT TGAACATGAA AATAAAAAAG GATTATTTTC ATGTAGGTAC ATAGTAGTTA GTTAATAAAT ATTCAAGTAA 001120 001121 TAGAACACTT TAGGACTTCT ATATGGAAAA GAGCCATGAA GCCAGGAGTG CTCACAGAAC ATTTTCTAGA AAAGTAGGAC 001200 001201 CTTGCATGAG TTCTTTGAAT GAATGTACTT TGCATAGGCA AGAGAATTCT TTCCCGAGAT TCTCACTTTT TCTTTTTTCT 001280 001281 CCAGCTTTAT TAAGGTATAA TTGACAAAAG TTTTATGTAC TTATGGTACA ACATGATGTT TTCATATATG TATATGTTGT 001360 001361 GGAATGATTA AATTAAGCTA CTTAATGTAT CTATTACTTC ACATACTTAT TTGTTGTGGT GAGTTTTATT TTCACAATTT 001440 001441 TTTAAGGCTA TCATACACGT AAAGCATGTG ATACTGCAAT TTCATTTATC ATGGTGAGTT TTATTTCCAT TGTATTTTTA 001520 001521 AAGGCTATCA TGCATGTAAA GCGTATGATA CTGGATTTTC ATTTATTATG TCACCATGAT AAATAAATAA AGAAGAGAGG 001600 001601 GTGGCTTTAA GGAAAAGAGC ATAAGATATG TGCAAATACT GCAAAGATTA TGAGGGTGCT CTGTGAATGA CTGAAGTTTG 001680 001681 GAAGTGCTAC CATGTAAGGT ATTACTGAAT GTAACAACTG ATTTTCTCTG CTAAGACAAA TCTGTCTTAG CAATTTTCAA 001760 001761 GTATATGATA TATCATTAGT TATAGTCATC ATGCTGTAAA ATAGATCTCC AGAATTTTTT CATCCTGTCT ACTTGAAACT 001840 001841 TTGTACCCTT TGACCAACAT CTCTGCATTC TGCCCACCAT ACCCCAATGT CCCCCTGGCA ACCACCATTC TGTTTTCTGC 001920 001921 TTCTATGAGT TTGACTTTTT TAGATTCTAC ATGTGATATT GTTTGGCTCT GTGTCCCCAC CCAAATCTCA TCTCGAATTG 002000 002001 TAATCCCCAC GTGTCAAGAG ATGGACAATT CCCACCTGTC GAGAGAGAGA GGTGACTGGA TCATGAAGGC AATTTCCCCC 002080 002081 TTGCTGTTTC ATGATAGTGA GTTCTCACGA GTTCTGATGG TTTGATAAGC AGTTTTCCCC ACTGTTGCTT GCTCTCTCTT 002160 002161 GCCTGCCACC ATGTAAGATG TGCCTGTTTC TCCTTCTGCC ATGATTGTAA GTTTCCTGAG ACCTCCCCAA CCATGCAGAA 002240 002241 CTGTGAGTCA ATTAAACCTC TTTTCTTTAA AAATT |
Predicted Small Protein
Name | NONHSAT003132_smProtein_1142:1303 |
Length | 54 |
Molecular weight | 6216.0384 |
Aromaticity | 0.11320754717 |
Instability index | 73.9679245283 |
Isoelectric point | 9.83404541016 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0276158511453 |
Amino acid sequence | MEKSHEARSAHRTFSRKVGPCMSSLNECTLHRQENSFPRFSLFLFSPALLRYN |
Secondary structure | LLLLHHHHHHHHHHLLLLLLLLLLLLLLLEELLLLLLLLEEEEEELHHHHLLL |
PRMN | - |
PiMo | - |